2019.05.17: This project is stopped and has been moved to ontpipeline2: https://github.com/xlinxlin/ontpipeline2

Pipeline for Oxford Nanopore Technologies

List of bioinformatics tools

• Guppy v2.3.1 https://community.nanoporetech.com
• Porechop 0.2.3 https://github.com/rrwick/Porechop
• NanoStat 1.1.2 https://github.com/wdecoster/nanostat
• NanoFilt 2.2.0 https://github.com/wdecoster/nanofilt
• Canu v1.8 https://github.com/marbl/canu
• Flye 2.4-release https://github.com/fenderglass/Flye
• Unicycler v0.4.8-beta https://github.com/rrwick/Unicycler

List of frameworks and libraries

• Node.js v10.15.1 https://nodejs.org
• Electron v4.0.4 https://electronjs.org/
• Bootstrap v4.1.3 https://getbootstrap.com/
• jQuery v3.3.1 https://jquery.com/

OS

• Ubuntu 16.04 LTS

IDE

• Visual Studio Code 1.31.1 https://code.visualstudio.com/

Others

• PBS 2.4.16
• Anaconda https://www.anaconda.com/
• ReadtheDocs https://readthedocs.org/