ontb_guppy.pbs.o36

Tue Feb 19 10:20:15 CET 2019 Analysis starts.
Tue Feb 19 10:20:15 CET 2019 Your workdir is /home/yan/ncct/TestData/fast5_106_sqk-rbk004.
Tue Feb 19 10:20:15 CET 2019 Basecall starts.
ONT Guppy basecalling software:
config file:        /opt/ont/guppy/data/dna_r9.4.1_450bps.cfg
model file:         /opt/ont/guppy/data/template_r9.4.1_450bps_5mer_raw.jsn
input path:         /home/yan/ncct/TestData/fast5_106_sqk-rbk004
save path:          /home/yan/ncct/TestData/basecalled/
chunk size:         1000
chunks per runner:  20
records per file:   0
num basecallers:    4
cpu mode:           ON
threads per caller: 1

Found 1 fast5 files to process.
Init time: 347 ms

0%   10   20   30   40   50   60   70   80   90   100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
Caller time: 1609127 ms, Events: 50859611, kev/s: 31.607
Finishing up any open output files.
Basecalling completed successfully.
Tue Feb 19 10:47:05 CET 2019 Basecall ends.
Tue Feb 19 10:47:05 CET 2019 Demultiplexing starts.
ONT Guppy barcoding software:
input path:         /home/yan/ncct/TestData/basecalled/
save path:          /home/yan/ncct/TestData/barcodes/
arrangement files:  barcode_arrs_pcr12.cfg barcode_arrs_pcr96.cfg barcode_arrs_nb12.cfg barcode_arrs_nb24.cfg barcode_arrs_rbk.cfg barcode_arrs_lwb.cfg barcode_arrs_rlb.cfg barcode_arrs_rab.cfg barcode_arrs_rbk4.cfg barcode_arrs_vmk.cfg barcode_arrs_16s.cfg
min. score:         60

Found 4 fastq files.

0%   10   20   30   40   50   60   70   80   90   100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
Done.
Tue Feb 19 10:47:58 CET 2019 Demultiplexing ends.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming by using Porechop starts.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming starts with barcode01/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming ends with barcode01/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming starts with barcode02/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming ends with barcode02/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming starts with barcode03/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming ends with barcode03/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming starts with barcode04/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming ends with barcode04/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming starts with barcode05/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming ends with barcode05/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming starts with barcode06/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming ends with barcode06/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming starts with barcode07/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming ends with barcode07/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming starts with barcode08/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming ends with barcode08/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming starts with barcode09/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming ends with barcode09/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming starts with barcode10/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming ends with barcode10/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming starts with barcode11/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming ends with barcode11/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming starts with barcode12/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming ends with barcode12/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming starts with unclassified/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming ends with unclassified/fastq_runid_50a6171cadcfb6b5cb2dae4e75a0ccc05b71e3d8_0.fastq.
Tue Feb 19 10:47:58 CET 2019 Adapter trimming by using Porechop ends.
Tue Feb 19 10:47:58 CET 2019 Reads filte with NanoStat and NanoFilt starts.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter starts with barcode01.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter ends with barcode01.
Tue Feb 19 10:47:58 CET 2019 Reads filter starts with barcode01.
Tue Feb 19 10:47:58 CET 2019 Reads filter ends with barcode01.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter starts with barcode02.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter ends with barcode02.
Tue Feb 19 10:47:58 CET 2019 Reads filter starts with barcode02.
Tue Feb 19 10:47:58 CET 2019 Reads filter ends with barcode02.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter starts with barcode03.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter ends with barcode03.
Tue Feb 19 10:47:58 CET 2019 Reads filter starts with barcode03.
Tue Feb 19 10:47:58 CET 2019 Reads filter ends with barcode03.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter starts with barcode04.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter ends with barcode04.
Tue Feb 19 10:47:58 CET 2019 Reads filter starts with barcode04.
Tue Feb 19 10:47:58 CET 2019 Reads filter ends with barcode04.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter starts with barcode05.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter ends with barcode05.
Tue Feb 19 10:47:58 CET 2019 Reads filter starts with barcode05.
Tue Feb 19 10:47:58 CET 2019 Reads filter ends with barcode05.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter starts with barcode06.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter ends with barcode06.
Tue Feb 19 10:47:58 CET 2019 Reads filter starts with barcode06.
Tue Feb 19 10:47:58 CET 2019 Reads filter ends with barcode06.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter starts with barcode07.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter ends with barcode07.
Tue Feb 19 10:47:58 CET 2019 Reads filter starts with barcode07.
Tue Feb 19 10:47:58 CET 2019 Reads filter ends with barcode07.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter starts with barcode08.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter ends with barcode08.
Tue Feb 19 10:47:58 CET 2019 Reads filter starts with barcode08.
Tue Feb 19 10:47:58 CET 2019 Reads filter ends with barcode08.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter starts with barcode09.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter ends with barcode09.
Tue Feb 19 10:47:58 CET 2019 Reads filter starts with barcode09.
Tue Feb 19 10:47:58 CET 2019 Reads filter ends with barcode09.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter starts with barcode10.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter ends with barcode10.
Tue Feb 19 10:47:58 CET 2019 Reads filter starts with barcode10.
Tue Feb 19 10:47:58 CET 2019 Reads filter ends with barcode10.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter starts with barcode11.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter ends with barcode11.
Tue Feb 19 10:47:58 CET 2019 Reads filter starts with barcode11.
Tue Feb 19 10:47:58 CET 2019 Reads filter ends with barcode11.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter starts with barcode12.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter ends with barcode12.
Tue Feb 19 10:47:58 CET 2019 Reads filter starts with barcode12.
Tue Feb 19 10:47:58 CET 2019 Reads filter ends with barcode12.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter starts with barcoding_summary.txt.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter ends with barcoding_summary.txt.
Tue Feb 19 10:47:58 CET 2019 Reads filter starts with barcoding_summary.txt.
Tue Feb 19 10:47:58 CET 2019 Reads filter ends with barcoding_summary.txt.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter starts with read_processor_log-2019-02-19_10-47-05.log.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter ends with read_processor_log-2019-02-19_10-47-05.log.
Tue Feb 19 10:47:58 CET 2019 Reads filter starts with read_processor_log-2019-02-19_10-47-05.log.
Tue Feb 19 10:47:58 CET 2019 Reads filter ends with read_processor_log-2019-02-19_10-47-05.log.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter starts with unclassified.
Tue Feb 19 10:47:58 CET 2019 Reads check before filter ends with unclassified.
Tue Feb 19 10:47:58 CET 2019 Reads filter starts with unclassified.
Tue Feb 19 10:47:58 CET 2019 Reads filter ends with unclassified.
Tue Feb 19 10:47:58 CET 2019 Reads filter ends.
Tue Feb 19 10:47:58 CET 2019 Reads check after filter with NanoStat starts.
Tue Feb 19 10:47:58 CET 2019 Reads check after filter ends.
Tue Feb 19 10:47:58 CET 2019 Generate the summury files.
Tue Feb 19 10:47:58 CET 2019 Assembly with Unicycler starts.
Tue Feb 19 10:47:58 CET 2019 Assembly ends.
Tue Feb 19 10:47:58 CET 2019 Done.