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Issues: HingeAssembler/HINGE

30 Open 55 Closed
30 Open 55 Closed
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Issues list

new release?
#162 opened Jul 10, 2021 by 0xaf1f
KeyError: 844 in: get_draft_path.py
#161 opened Jun 10, 2021 by jsimba-99
TypeError: must be str, not bytes in parse_read.py script
#160 opened Jun 9, 2021 by jsimba-99
2
FileNotFoundError: [Errno 2] No such file or directory /C.odor_temp_.G2.graphml'
#159 opened May 25, 2021 by jsimba-99
2
./hinge: line 10: Reads_filter: command not found
#157 opened Sep 12, 2019 by sarah872
hinge on a large plant genome
#156 opened May 3, 2019 by dcopetti
1
error message with hinge - no alignments
#152 opened Aug 30, 2018 by gabster
2
cannot open ./reads.fasta for 'r'
#151 opened Aug 22, 2018 by gabster
@fxia22
11
What is the significance of the parameter "quality_threshold = 0.23" in nominal.ini?
#150 opened Mar 22, 2018 by SchwarzEM
How can I edit ./utils/build.sh so that it 'sees' hdf5.h while running?
#145 opened Feb 13, 2018 by SchwarzEM
5
ini settings recomandation for plant genome
#144 opened Jan 29, 2018 by mictadlo
4
hinge draft always outputs blank line and runs for a long time
#142 opened Jan 27, 2018 by nottwy
3
DBdust with HINGE
#140 opened Jan 1, 2018 by mictadlo
3
Is HINGE PYPY compatible?
#139 opened Dec 18, 2017 by mictadlo
1
HINGE process getting killed with large datasets due to single large las file (?)
#136 opened Nov 29, 2017 by alimayy
2
Step: filter problem: (null): .qual-track does not exist for this db.
#135 opened Nov 23, 2017 by nottwy
1
'DiGraph' object has no attribute 'edge' maintenance
#132 opened Oct 1, 2017 by asdcid
11
Can this tool assemble a large genome?
#131 opened Sep 28, 2017 by okokookk
1
The parameters of Module 'draft-path'
#129 opened Sep 12, 2017 by nottwy
25
HINGE graph output
#122 opened Jul 20, 2017 by alimayy
3
Question: clip vc clip-nanopore? new use case
#119 opened Jul 4, 2017 by spock
2
HINGE for minimap
#112 opened May 10, 2017 by ebioman
@fxia22
10
Error 'couldn't finish sparsification2522' at postprocessing step (hinge clip) help wanted
#111 opened May 3, 2017 by agroppi
3
HINGE stalled and producing a huge empty error/ouput file help wanted
#110 opened Apr 26, 2017 by agroppi
6
HINGE, Oxford Nanopore, E. coli, 23X coverage, almost closed assembly
#107 opened Apr 3, 2017 by alimayy
ProTip! Exclude everything labeled bug with -label:bug.