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a summarized GCI score for multiple specific regions #7

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dongyawu opened this issue Apr 16, 2024 · 2 comments
Closed

a summarized GCI score for multiple specific regions #7

dongyawu opened this issue Apr 16, 2024 · 2 comments
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enhancement New feature or request

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@dongyawu
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Hi, Quanyu! thanks for your efforts to improve this nice tool.
I am evaluating the assembly quality of centromeres and GCI can generate the score of a specific region. how about generating a summarized GCI score for multiple regions? just like a whole-genome score?
@yeeus yeeus added the enhancement New feature or request label Apr 16, 2024
yeeus added a commit that referenced this issue Apr 17, 2024
@yeeus
add the summarized GCI score for multiple specific regions (#7)
fd112de
yeeus added a commit that referenced this issue Apr 17, 2024
@yeeus
Merge pull request #8 from yeeus/dev
9a15e91 
add the summarized GCI score for multiple specific regions (#7)
@yeeus
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yeeus commented Apr 17, 2024

Now, in the latest beta version (commit 9a15e91), you can get a summarized GCI score in the file named ${prefix}.regions.gci if providing regions file with -R

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yeeus commented Oct 3, 2024

I will close this issue due to long time of inactivity.

@yeeus yeeus closed this as completed Oct 3, 2024
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@dongyawu @yeeus