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@x-atlas-consortia

Atlas Consortia

A place for consortia who produce biologic data organized into atlases to share software resources.

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  1. ubkg-neo4j ubkg-neo4j Public

    A container implementation to serve the Unified Biomedical Knowledge Graph in Neo4j

    Shell 1

  2. ubkg-etl ubkg-etl Public

    A framework that combines data from the UMLS with assertions from other data sources into a set of CSV files that can be imported into neo4j to build a Unified Biomedical Knowledge Graph (UBKG)

    Python 4

  3. data-ingest-board data-ingest-board Public

    The UI App for HuBMAP and Sennet Data Publishing Dashboard

    JavaScript 1

  4. hra-api hra-api Public

    HRA-API: Human Reference Atlas API

    Jupyter Notebook

  5. hra-pop hra-pop Public

    HRApop

    JavaScript 1

  6. hs-ontology-api hs-ontology-api Public

    Ontology API built on top of the UBKG API and shared by HuBMAP and SenNet projects

    Python 2

Repositories

Showing 10 of 32 repositories
  • Guesdt Public

    Guesdt (Graphing UMLS Enables Search In Dynamic Trees)

    x-atlas-consortia/Guesdt’s past year of commit activity
    Dockerfile 0 0 1 0 Updated Mar 21, 2025
  • hs-ontology-api Public

    Ontology API built on top of the UBKG API and shared by HuBMAP and SenNet projects

    x-atlas-consortia/hs-ontology-api’s past year of commit activity
    Python 2 0 3 1 Updated Mar 21, 2025
  • ubkg-api Public

    A web service for the Unified Biomedical Knowlege Graph system

    x-atlas-consortia/ubkg-api’s past year of commit activity
    Python 2 MIT 0 3 1 Updated Mar 20, 2025
  • SimpleKnowledge Public

    The SimpleKnowledge property graph editor

    x-atlas-consortia/SimpleKnowledge’s past year of commit activity
    0 CC0-1.0 0 0 0 Updated Mar 20, 2025
  • user-key-value-api Public

    A RESTful service for storing values by user and key

    x-atlas-consortia/user-key-value-api’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Mar 20, 2025
  • uuid-api Public

    A restful web service used to create and query UUIDs used across HuBMAP and SenNet

    x-atlas-consortia/uuid-api’s past year of commit activity
    Python 2 MIT 0 6 1 Updated Mar 20, 2025
  • donor-metadata Public

    Application used to prepare de-identified and encoded donor metadata to include with tissue samples registered with HuBMAP or SenNet

    x-atlas-consortia/donor-metadata’s past year of commit activity
    Python 0 MIT 0 5 0 Updated Mar 19, 2025
  • dev-assay-class-api Public

    A small development RESTful server exposing /assayclasses and /assayclasses/<assay-code>

    x-atlas-consortia/dev-assay-class-api’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Mar 18, 2025
  • hra-lit Public

    HRAlit

    x-atlas-consortia/hra-lit’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Mar 15, 2025
  • ubkg-docs Public

    Unified Biomedical Knowledge Graph (UBKG) Documentation

    x-atlas-consortia/ubkg-docs’s past year of commit activity
    JavaScript 2 MIT 1 0 0 Updated Mar 14, 2025
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