PLCT
http://www.cs.hmc.edu/~yjw/software/plct/
Yi-Chieh Wu, with libraries contributed from Matthew Rasmussen

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ABOUT

PLCT is a phylogenetic package for understanding gene tree evolution through
gene duplications, losses, and coalescence with multiple samples per species.
PLCT relies on the partially labeled coalescent tree data structure.
The package includes a program for determining reconciliation feasibility.

plct-feasible citation:
Rogers, Fishberg, Youngs, Wu.
Reconciliation Feasibility in the Presence of Gene Duplication, Loss, and
Coalescence with Multiple Individuals per Species.
In prep.

This package includes the Python source code of the program,
as well as several useful utilities for working with PLCTs.


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USAGE

Running 'plct-feasible' with no arguments will print out its command-line
usage.


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EXAMPLES

See examples/test.sh for an example of how to use each program in this
package.