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widdowquinn/README.md

Hi there 👋

About Me

I'm a computational biologist, currently working as a Senior Lecturer (US equiv. Associate Professor) in the Institute for Pharmacy and Biomedical Sciences (SIPBS), at the University of Strathclyde. I lead the SIPBS Computational Biology group.

Areas of Interest

Python Bioython Pandas Scipy Numpy NetworkX

R tidyverse

Conda VSCode Jupyter Git

Bash LaTeX MATLAB

Github stats Top Langs

GitHub Streak

EFF Membership Badge, 2024

Popular repositories Loading

  1. pyani pyani Public

    Application and Python module for average nucleotide identity analyses of microbes.

    Python 203 56

  2. find_differential_primers find_differential_primers Public

    Code for design of diagnostic PCR primers, and metabarcoding markers.

    Python 60 25

  3. ten_great_papers ten_great_papers Public

    Ten great papers for wet lab biologists starting out in computational biology

    50 14

  4. Teaching Teaching Public

    Code and files used in teaching and training courses.

    TeX 31 13

  5. scripts scripts Public

    Miscellaneous scripts

    Python 22 19

  6. Teaching-Stan-Hierarchical-Modelling Teaching-Stan-Hierarchical-Modelling Public

    Jupyter notebooks for teaching hierarchical Bayesian modelling with Stan

    HTML 22 11

1,050 contributions in the last year

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Activity overview

Contributed to pyani-plus/pyani-plus, sipbs-compbiol/BM327-Workshop-1, sipbs-compbiol/BM425-Workshop-1 and 30 other repositories
Loading A graph representing widdowquinn's contributions from March 24, 2024 to March 24, 2025. The contributions are 82% commits, 8% code review, 6% issues, 4% pull requests.

Contribution activity

March 2025

Opened 5 pull requests in 4 repositories
Reviewed 7 pull requests in 1 repository

Created an issue in monserrj/BMC-database that received 7 comments

Refactor db_sqlalchemy_withdata.py

At the moment, db_sqlalchemy_withdata.py is a monolithic script that does everything at once. To make development easier and more manageable (you'l…

7 comments
1 contribution in private repositories Mar 7
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