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Rebase the oriC branch on master #15

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Rebase the oriC branch on master #15

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@cdiener cdiener commented May 11, 2022

This is just a rebase of the oriC branch on the main branch to keep it alive. It will need to be force merged into the oriC branch (merges fine with the main branch).

I also fixed the tests, so they can actually be run.

tyjo and others added 30 commits February 13, 2021 08:51
Using the class directly as the entry point would return the instance
and thus create a non-zero exit code.
* use `pathlib.Path` in critical places
* open files in a context where possible
* use `datetime` instead of `time`
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