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@snakemake

Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.4k 585

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 218 190

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 160 29

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    58 12

  5. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 32 10

  6. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 31 24

Repositories

Showing 10 of 59 repositories
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog’s past year of commit activity
    Python 32 MIT 10 3 0 Updated Mar 20, 2025
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    Python 2,414 MIT 585 1,083 (1 issue needs help) 89 Updated Mar 20, 2025
  • snakemake-interface-storage-plugins Public

    This package provides a stable interface for interactions between Snakemake and its storage plugins.

    snakemake/snakemake-interface-storage-plugins’s past year of commit activity
    Python 2 MIT 8 4 1 Updated Mar 20, 2025
  • snakemake-interface-logger-plugins Public
    snakemake/snakemake-interface-logger-plugins’s past year of commit activity
    Python 2 MIT 1 0 0 Updated Mar 20, 2025
  • snakemake-storage-plugin-fs Public

    A Snakemake storage plugin that reads and writes from a locally mounted filesystem using rsync.

    snakemake/snakemake-storage-plugin-fs’s past year of commit activity
    Python 2 MIT 4 4 1 Updated Mar 20, 2025
  • snakemake-executor-plugin-aws-batch Public

    A Snakemake executor plugin for AWS Batch

    snakemake/snakemake-executor-plugin-aws-batch’s past year of commit activity
    Python 6 MIT 5 2 1 Updated Mar 20, 2025
  • poetry-snakemake-plugin Public

    Plugin for poetry that adds snakemake specific functionality

    snakemake/poetry-snakemake-plugin’s past year of commit activity
    Python 5 1 0 1 Updated Mar 19, 2025
  • snakemake-storage-plugin-xrootd Public

    A Snakemake storage plugin for handling input and output via XRootD

    snakemake/snakemake-storage-plugin-xrootd’s past year of commit activity
    Python 1 MIT 3 2 2 Updated Mar 19, 2025
  • snakemake-storage-plugin-s3 Public

    A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.)

    snakemake/snakemake-storage-plugin-s3’s past year of commit activity
    Python 2 MIT 11 1 1 Updated Mar 18, 2025
  • snakemake-storage-plugin-http Public

    Snakemake storage plugin for donwloading input files from HTTP(s).

    snakemake/snakemake-storage-plugin-http’s past year of commit activity
    Python 0 MIT 4 4 4 Updated Mar 18, 2025
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