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indexgen will generate index with bgen file, so we don't need to copy…
WomtoolCheck #125: Commit 03d729b pushed by shengqh
March 24, 2025 14:53 4m 9s develop
March 24, 2025 14:53 4m 9s
compatible with requster pay bucket
WomtoolCheck #124: Commit ae37f38 pushed by shengqh
March 24, 2025 06:37 4m 22s develop
March 24, 2025 06:37 4m 22s
bugfix for chinese character
WomtoolCheck #123: Commit d04ac43 pushed by shengqh
March 24, 2025 06:16 4m 16s develop
March 24, 2025 06:16 4m 16s
VUMCBgenUrlHailIndex
WomtoolCheck #122: Commit 067d6fe pushed by shengqh
March 24, 2025 04:48 4m 20s develop
March 24, 2025 04:48 4m 20s
improve speed
WomtoolCheck #121: Commit 820a868 pushed by shengqh
March 22, 2025 04:26 4m 23s develop
March 22, 2025 04:26 4m 23s
VUMCBcftools
WomtoolCheck #120: Commit de566ff pushed by shengqh
March 21, 2025 02:16 4m 12s develop
March 21, 2025 02:16 4m 12s
increase cpu for the first step
WomtoolCheck #119: Commit 9534e01 pushed by shengqh
March 20, 2025 22:43 4m 10s develop
March 20, 2025 22:43 4m 10s
VUMCExomeGermlineSingleSampleFromFastqLessQC
WomtoolCheck #118: Commit 41e85a7 pushed by shengqh
March 20, 2025 16:50 5m 1s develop
March 20, 2025 16:50 5m 1s
March 20, 2025 16:46 4m 5s
remove unmapped to mapped qc
WomtoolCheck #116: Commit 6e8e627 pushed by shengqh
March 20, 2025 15:56 4m 13s develop
March 20, 2025 15:56 4m 13s
seperate task to multiple steps to save the cost
WomtoolCheck #115: Commit 1783914 pushed by shengqh
March 20, 2025 02:06 4m 21s develop
March 20, 2025 02:06 4m 21s
filter sample first, then clern fields.
WomtoolCheck #114: Commit 2a448b0 pushed by shengqh
March 19, 2025 23:27 4m 12s develop
March 19, 2025 23:27 4m 12s
apply ref_fasta on both norm + and -
WomtoolCheck #113: Commit f8bbd58 pushed by shengqh
March 19, 2025 22:08 4m 8s develop
March 19, 2025 22:08 4m 8s
VUMCVcfExtractSampleAndFilterAF
WomtoolCheck #112: Commit bf0df7f pushed by shengqh
March 19, 2025 21:42 4m 15s develop
March 19, 2025 21:42 4m 15s
adjust disk_factor
WomtoolCheck #111: Commit d5a5794 pushed by shengqh
March 19, 2025 19:20 4m 14s develop
March 19, 2025 19:20 4m 14s
update to use gcputil to copy data. also include bcftools option for …
WomtoolCheck #110: Commit 6f620e1 pushed by shengqh
March 19, 2025 19:15 4m 13s develop
March 19, 2025 19:15 4m 13s
VUMCVcf2SitesOnly
WomtoolCheck #109: Commit 1bd5d20 pushed by shengqh
March 18, 2025 02:49 4m 28s develop
March 18, 2025 02:49 4m 28s
force split_par for chrX
WomtoolCheck #108: Commit ac5223d pushed by shengqh
March 17, 2025 17:15 4m 11s develop
March 17, 2025 17:15 4m 11s
preemptible: 3
WomtoolCheck #107: Commit d40a357 pushed by shengqh
March 17, 2025 13:31 4m 19s develop
March 17, 2025 13:31 4m 19s
remove replicated vcfinfo workflow
WomtoolCheck #106: Commit 03d8a39 pushed by shengqh
March 17, 2025 03:09 4m 19s develop
March 17, 2025 03:09 4m 19s
VUMCVcfInfo
WomtoolCheck #105: Commit 8dd85be pushed by shengqh
March 17, 2025 00:02 4m 6s develop
March 17, 2025 00:02 4m 6s
vcf2bgen with psam file
WomtoolCheck #104: Commit cc6c401 pushed by shengqh
March 16, 2025 19:13 4m 7s develop
March 16, 2025 19:13 4m 7s
use project_id
WomtoolCheck #103: Commit ed8d236 pushed by shengqh
March 14, 2025 22:51 4m 8s develop
March 14, 2025 22:51 4m 8s
check gcp bucket
WomtoolCheck #102: Commit fb84260 pushed by shengqh
March 14, 2025 22:41 4m 10s develop
March 14, 2025 22:41 4m 10s
update workflow name
WomtoolCheck #101: Commit 2b9d3ee pushed by shengqh
March 14, 2025 22:22 4m 11s develop
March 14, 2025 22:22 4m 11s