Repositories list

• upptime

  Public
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •1•1•3•1•Updated Mar 21, 2025Mar 21, 2025

• ice-builder-gradle

  Public
  Gradle plug-in to automate the compilation of Slice files to Java

  Groovy

  •

  BSD 3-Clause "New" or "Revised" License

  •10•0•1•0•Updated Mar 20, 2025Mar 20, 2025

• omero-gradle-plugins

  Public
  Super-project of all gradle plugins for OMERO

  buildgradleplugins+ 2omerometa-repo

  Dockerfile

  •9•1•1•5•Updated Mar 20, 2025Mar 20, 2025

• omero-documentation

  Public
  Sphinx-based documentation for the Open Microscopy Environment

  documentationomeroome

  Python

  •

  BSD 2-Clause "Simplified" License

  •51•22•28•9•Updated Mar 20, 2025Mar 20, 2025

• omero-javapackager-plugin

  Public
  Plugin for creating an installable java package (dmg, exe, etc.) using javapackager command line tool

  Groovy

  •

  GNU General Public License v2.0

  •4•2•0•1•Updated Mar 19, 2025Mar 19, 2025

• omero-dsl-plugin

  Public
  Build tool for generating code in OMERO

  Java

  •

  GNU General Public License v2.0

  •5•0•2•0•Updated Mar 19, 2025Mar 19, 2025

• omero-blitz-plugin

  Public
  Build tool for generating remoting code in OMERO

  pluginbuildgradle+ 3iceomerozeroc

  Groovy

  •

  GNU General Public License v2.0

  •4•0•1•0•Updated Mar 19, 2025Mar 19, 2025

• omero-api-plugin

  Public
  Groovy

  •

  GNU General Public License v2.0

  •5•0•0•0•Updated Mar 19, 2025Mar 19, 2025

• ome-model-documentation

  Public
  Python

  •

  BSD 2-Clause "Simplified" License

  •3•0•1•1•Updated Mar 19, 2025Mar 19, 2025

• omero-artifact-plugin

  Public
  Gradle plugin responsible for adding common build logic for publishing omero artifacts

  Kotlin

  •

  GNU General Public License v2.0

  •8•1•0•0•Updated Mar 18, 2025Mar 18, 2025

• bio-formats-build

  Public
  Bio-Formats top-level build for all components

  buildbio-formatsmeta-repo

  Shell

  •10•0•1•5•Updated Mar 17, 2025Mar 17, 2025

• ome-zarr-py

  Public
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  omezarrngff+ 1ome-zarr

  Python

  •

  Other

  •57•181•58•13•Updated Mar 17, 2025Mar 17, 2025

• napari-ome-zarr

  Public
  A napari plugin for zarr backed OME-NGFF images

  napari-pluginzarrngff+ 1python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •21•32•23•7•Updated Mar 17, 2025Mar 17, 2025

• bioimage-latency-benchmark

  Public
  Jupyter Notebook

  •

  Other

  •10•7•6•4•Updated Mar 17, 2025Mar 17, 2025

• omero-demo-cleanup

  Public
  A CLI plugin for managing the disk space on the OME demo server

  Python

  •

  GNU General Public License v2.0

  •4•2•1•2•Updated Mar 17, 2025Mar 17, 2025

• omero-cli-zarr

  Public
  omerozarrngff+ 1ome-zarr-converter

  Python

  •

  GNU General Public License v2.0

  •10•16•17•6•Updated Mar 17, 2025Mar 17, 2025

• ome_zarr_test_suite

  Public
  Test suite of reader and writer implementations

  Python

  •6•4•3•3•Updated Mar 17, 2025Mar 17, 2025

• bio-formats-documentation

  Public
  Bio-Formats documentation

  documentationbio-formats

  Java

  •

  BSD 2-Clause "Simplified" License

  •18•8•1•3•Updated Mar 17, 2025Mar 17, 2025

• omero-python-superbuild

  Public
  OMERO build for Python server components

  pythonbuildomero+ 1meta-repo

  4•0•1•1•Updated Mar 17, 2025Mar 17, 2025

• apacheds-docker

  Public
  Dockerfile to build an ApacheDS container providing an LDAP and optionally a Kerberos service.

  testingdockerldap+ 1ome

  Python

  •83•41•4•3•Updated Mar 15, 2025Mar 15, 2025

• bioformats

  Public
  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

  javametadataimage+ 7format-readerformat-converterwhole-slide-imagingwsilightsheetbio-formatslife-sciences-image

  Java

  •

  GNU General Public License v2.0

  •247•392•189•11•Updated Mar 14, 2025Mar 14, 2025

• omero-py

  Public
  Python project containing Ice remoting code for OMERO

  pythoncomponentlib+ 1omero

  Python

  •

  GNU General Public License v2.0

  •34•23•60•15•Updated Mar 14, 2025Mar 14, 2025

• omero-build

  Public
  OMERO top-level build for all components

  buildomerometa-repo

  Dockerfile

  •7•1•3•0•Updated Mar 13, 2025Mar 13, 2025

• openmicroscopy

  Public
  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded …

  pythonimagedatabase+ 3serveromerojava

  Java

  •

  GNU General Public License v2.0

  •102•208•25•8•Updated Mar 13, 2025Mar 13, 2025

• omero-web-docker

  Public
  OMERO.web production docker image

  omeroomeopenmicroscopy+ 2omero-webdocker

  Makefile

  •

  BSD 2-Clause "Simplified" License

  •20•6•12•8•Updated Mar 11, 2025Mar 11, 2025

• omero-gateway-java

  Public
  Gradle project containing OMERO Java Client Library

  javaapibuild+ 5sdkcomponentgradlejaromero

  Java

  •

  GNU General Public License v2.0

  •9•1•16•3•Updated Mar 11, 2025Mar 11, 2025

• omero-blitz

  Public
  Gradle project containing Ice remoting code for OMERO

  componentserverjar+ 2libomero

  Java

  •

  GNU General Public License v2.0

  •15•0•31•3•Updated Mar 11, 2025Mar 11, 2025

• omero-server

  Public
  Gradle project containing main server logic for OMERO

  componentserverjar+ 2libomero

  Java

  •

  GNU General Public License v2.0

  •14•6•39•5•Updated Mar 11, 2025Mar 11, 2025

• omero-renderer

  Public
  Gradle project containing rendering functionality for OMERO

  componentgradlejar+ 1omero

  Java

  •

  GNU General Public License v2.0

  •10•0•2•2•Updated Mar 11, 2025Mar 11, 2025

• omero-romio

  Public
  Gradle project for the ROMIO library of OMERO

  libraryjario+ 1omero

  Java

  •

  GNU General Public License v2.0

  •13•0•3•2•Updated Mar 11, 2025Mar 11, 2025