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    21 repositories

    • 2019_AJF

      Public
      Harris, S.E., De Blasio, M.J., Zhao, X, Ma, M., Davies, K.L., Wooding, F.B.P., Hamilton, R.S., Blache, D., Meredith, D., Murray, A.J., Fowden, A.L. & Forhead, A.J. (2019) Thyroid deficiency before birth modifies adipose transcriptome to promote white adipose tissue growth and impair thermogenic capacity. Thyroid. https://doi.org/10.1089/thy.2019…
      doicambridgesheep-adipose
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jul 31, 2024Jul 31, 2024

    • 2020-Napso_Sferruzzi-Perri

      Public
      The secretome map of the placenta
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Feb 16, 2024Feb 16, 2024

    • Yung_Charnock-Jones

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 28, 2022Nov 28, 2022

    • Sheridan_Turco

      Public
      Primary human trophoblast models: deciphering their in vivo equivalents and recapitulating HLA expression
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 1, 2021Nov 1, 2021

    • Cindrova-Davies_Turco

      Public
      RNASeq analysis for Endometrial organoids compare to Menstrual with 7 individuals.
      R
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      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 26, 2021Jul 26, 2021

    • Blake_Watson

      Public
      Genetic disruption of folate metabolism causes epigenetic instability in sperm and distinguishes HIRA as a biomarker of maternal epigenetic inheritance
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 17, 2021Jun 17, 2021

    • 2020_Prater_Cindrova

      Public
      Preflow vs Postflow RNA-seq
      HTML
      •1•2•0•0•Updated May 6, 2021May 6, 2021

    • CTR_kf284_0002

      Public
      CTR_kf284_0002 and CTR_kf284_0003, RNA-seq experiments
      HTML
      •1•0•0•0•Updated Mar 23, 2021Mar 23, 2021

    • cuPCAke

      Public
      cuPCAke: Exploration of Principal Component Analysis for NGS
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 24, 2020Sep 24, 2020

    • First-Second-Trimester-Methylation

      Public
      Prater, M., Hamilton, R.S., Yung, H-W, Sharkey, A.M., Robson, P, Jauniaux, E., Charnock-Jones, D.S., Burton G.J. & Cindrova-Davies, T. (2020) RNA-Seq reveals changes in human placental metabolism, transport and endocrinology function in the first-second trimester transition. Submitted
      R
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Aug 25, 2020Aug 25, 2020

    • ConstructingComputationalPipelines

      Public
      Ong, C-K & Hamilton, R.S. (2018) Constructing Computational Pipelines Encyclopedia of Bioinformatics and Computational Biology, 3, 135-143 https://doi.org/10.1016/B978-0-12-809633-8.20090-3
      Perl
      •1•0•0•0•Updated May 7, 2020May 7, 2020

    • Kyprianou_Zernika-Goetz

      Public
      Kyprianou, C., Christodoulou, N., Hamilton, R.S., Nahaboo, W., Boomgaard, D., Amadei, G., Migeotte, I. & Zernicka-Goetz, M. (2020) Basement membrane remodelling regulates mouse embryogenesis. https://doi.org/10.1038/s41586-020-2264-2
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated May 7, 2020May 7, 2020

    • 2018_Bacon_Charnock-Jones

      Public
      Bacon, W.A., Hamilton, R.S., Yu, Z., Kieckbusch, J., Hawkes, D., Krzak, A., Abell, C., Colucci, F. & Charnock-Jones, D.S. (2018) Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice. Front. Immunol., 9:2523 https://doi.org/10.3389/fimmu.2018.02523
      drop-seqsingle-cell-rna-seqt-cells
      R
      •
      GNU General Public License v3.0
      •4•5•0•0•Updated Oct 18, 2019Oct 18, 2019

    • 2019-Menelaou-Watson

      Public
      Menelaou, K., Prater, M., Tuster, S.J., Blake, G.E.T, Geary-Joo, C., Cross, J.C., Hamilton, R.S. and Watson, E.D. (2019) Blastocyst transfer in mice alters the placental transcriptome and growth. Reproduction, 159:2, 115-132 https://dx.doi.org/10.1530/REP-19-0293
      R
      •0•0•0•0•Updated Oct 2, 2019Oct 2, 2019

    • 2019-PlacentalBiologyCourse

      Public
      2009 Placental Biology Course (CTR)
      HTML
      •0•1•3•0•Updated Jul 4, 2019Jul 4, 2019

    • 2018-Filipovic-Colucci

      Public
      RNA-Seq Analysis Scripts to accompany: Filipovic, I, Chiossone, L., Vacca, P., Hamilton, R.S., Doisne, J.M., Eberl, G., Walzer, T., Mingari, C., Sharkey, A., Moretta, L., Colucci, F. (2018) Molecular definition of group 1 innate lymphoid cells in the mouse uterus. [Nature Communications, https://doi.org/10.1038/s41467-018-06918-3][bioRxiv, https…
      HTML
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      GNU General Public License v3.0
      •1•0•0•0•Updated Dec 6, 2018Dec 6, 2018

    • 2018-Turco-Moffett

      Public
      Turco, M.Y., Gardner, L., Kay, R.G., Hamilton, R.S., Prater, M., McWhinnie, A., Hollinshead., M., Esposito, L., Fernando, R., Skelton, H., Reimann, F., Gribble, F., Sharkey, A., Marsh, S.G.E., O’Rahilly, S., Hemberger, M., Burton, G.J. and Moffett, A. (2018) Trophoblast organoids as a model for maternal–fetal interactions during human placentati…
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Nov 29, 2018Nov 29, 2018

    • 2018-PlacentalBiologyCourse

      Public
      HTML
      •0•0•7•0•Updated Jul 5, 2018Jul 5, 2018

    • 2018-Balmas-Colucci

      Public
      RNA-Seq Analysis Scripts to accompany: Balmas, E., et al (2018) Maternal group 2 innate lymphoid cells control fetal growth and protect from endotoxin-induced abortion in mice. doi:https://doi.org/10.1101/348755
      R
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      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 18, 2018Jun 18, 2018

    • 2017-Balmas-Colucci

      Public
      0•0•0•0•Updated Jun 14, 2018Jun 14, 2018

    • CambridgeHackathon

      Public
      Cambridge Hackathon 2017
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 27, 2017Sep 27, 2017