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@neurobagel

Neurobagel

An ecosystem for distributed dataset harmonization and search.

👋 Welcome to Neurobagel! 🧠🥯

Our goal with the Neurobagel project is to provide a way for researchers and other data users to define and find cohorts of individuals across datasets. Not all useful and important data can be openly shared or are allowed to be uploaded to remote servers. Our approach is to ask data providers to describe their data with metadata, so that we can let others find out about the data without having direct access to them.

We are building tools with the goal of making the annotation, integration, and searching of these easier. This project is still relatively young, but we are excited to get this into the hands of people and hope that it will be useful. The project originated from the ORIGAMI lab with the Douglas Hospital and support from many other projects, including ReproNim and NeuroHub.

For more information, check out our:

Come say hello!

Contacts: Sebastian Urchs and JB Poline

Pinned Loading

  1. api api Public

    Python 4 5

  2. query-tool query-tool Public

    User interface for searching across Neurobagel graph

    TypeScript 2 3

  3. bagel-cli bagel-cli Public

    Command line tool for Neurobagel data parsing and annotation

    Python 3 5

  4. documentation documentation Public

    The neurobagel documentation

    JavaScript 12 7

  5. federation-api federation-api Public

    REST API for query federation over multiple Neurobagel graph databases

    Python

  6. annotation-tool annotation-tool Public

    TypeScript

Repositories

Showing 10 of 33 repositories
  • bagel-cli Public

    Command line tool for Neurobagel data parsing and annotation

    neurobagel/bagel-cli’s past year of commit activity
    Python 3 MIT 5 25 (3 issues need help) 3 Updated Mar 22, 2025
  • neurobagel/openneuro-annotations’s past year of commit activity
    0 MIT 0 0 0 Updated Mar 22, 2025
  • digest Public

    Web dashboard for neuroimaging-derived and phenotypic datasets

    neurobagel/digest’s past year of commit activity
    Python 2 MIT 2 23 2 Updated Mar 22, 2025
  • upptime Public

    Status dashboard of services hosted directly by Neurobagel

    neurobagel/upptime’s past year of commit activity
    Markdown 0 MIT 0 2 0 Updated Mar 22, 2025
  • neurobagel/annotation-tool’s past year of commit activity
    TypeScript 0 MIT 0 14 1 Updated Mar 21, 2025
  • workflows Public
    neurobagel/workflows’s past year of commit activity
    0 MIT 1 8 0 Updated Mar 21, 2025
  • query-tool Public

    User interface for searching across Neurobagel graph

    neurobagel/query-tool’s past year of commit activity
    TypeScript 2 MIT 3 39 (1 issue needs help) 1 Updated Mar 21, 2025
  • neurobagel_examples Public

    Example files using the neurobagel schema

    neurobagel/neurobagel_examples’s past year of commit activity
    0 MIT 0 0 1 Updated Mar 21, 2025
  • ui Public
    neurobagel/ui’s past year of commit activity
    TypeScript 0 MIT 0 6 0 Updated Mar 21, 2025
  • tools Public

    Other helpful tools for interfacing with Neurobagel

    neurobagel/tools’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Mar 20, 2025

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