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85 Open 795 Closed
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Issues list

fasterq-dump quit with error code 3
#1026 opened Mar 13, 2025 by IridaSh
vdb-validate PRIMARY_ALIGNMENT_IDS inconsistent pair
#1025 opened Mar 12, 2025 by rhughwhite
2
Documentation does not define "spot"
#1018 opened Feb 22, 2025 by outpaddling
/etc/profile.d/sra-tools.csh broken
#1011 opened Feb 14, 2025 by outpaddling
Spelling mistakes in SRA configuration
#1009 opened Feb 11, 2025 by EllieHogan
prefetch.3.1.1 err: name not found while resolving query within virtual file system module
#1008 opened Feb 6, 2025 by J-Calvelo
1
dbGAP retrieve issue
#1006 opened Jan 17, 2025 by prete
1
08.-prefetch-and-fasterq-dump => no listing of output formats
#1000 opened Dec 28, 2024 by nick-youngblut
2
docs on setting up vdb-config in an automated setting
#998 opened Dec 19, 2024 by nick-youngblut
1
Dump fastq to sra-lite
#995 opened Dec 12, 2024 by ledwmp
3
"Failed to call external services." error
#987 opened Nov 12, 2024 by ThibauldMichel
3
List contents of a cart file?
#969 opened Sep 24, 2024 by amstilp
1
Required firewall rules for SRA toolkit
#959 opened Aug 20, 2024 by MaxDegenerEvotec
Building against HDF5/1.14.4.3
#958 opened Aug 20, 2024 by pgrt
1
Feature suggestion: option in fasterq-dump to output the FASTQ files already gzipped
#956 opened Aug 14, 2024 by fantauzzi
no clip option for fasterq-dump
#952 opened Jul 23, 2024 by paulzierep
2
vdb-config: use AWS IAM role instead of credentials file
#945 opened Jul 4, 2024 by peter-sandor-1992
1
fasterq-dump into six files?
#944 opened Jul 1, 2024 by jeongyeonkim95
1
error code 3 for some nanopore datasets
#943 opened Jun 27, 2024 by yfukasawa
1
Unresolved dependencies with prefetch followed by fatal segmentation fault error
#940 opened Jun 12, 2024 by guester
1
vdb-config
#936 opened May 8, 2024 by anjilsri
3
prefetch - failed to verify error
#920 opened Mar 23, 2024 by uasic
26
Prefetch SSL Certificate Verification Error in NCBI SRA Toolkit
#905 opened Feb 1, 2024 by angerray
5
fasterq-dump overloads memory
#903 opened Jan 29, 2024 by mfansler
13
fasterq-dump quit with error code 3; err: the input data is missing the QUALITY-column
#902 opened Jan 28, 2024 by huang-juanjuan
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