Variant analysis tools, primarily for annotating and parsing through VCFs/ANNOVAR output.
Scripts and example data for generating refGene and PolyPhen2 annotations for variants using ANNOVAR.Recommend using full path to input data for each script. ANNOVAR documentation: http://annovar.openbioinformatics.org/en/latest/
Scripts and example data for parsing through VCFs and annotation output. Bash scripting provides a way to run over multiple samples and format final output.
Scripts and example data for plotting analysis output.