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  1. gctree gctree Public

    GCtree: phylogenetic inference of genotype-collapsed trees

    Python 17 2

  2. vampire vampire Public

    🧛 Deep generative models for TCR sequences 🧛

    Python 17 4

  3. sumrep sumrep Public

    Summary statistics for repertoires

    R 16 6

  4. olmsted olmsted Public

    B-cell repertoire and clonal family tree explorer

    JavaScript 15 4

  5. phippery phippery Public

    Python 15 2

  6. gapml gapml Public

    Python 11 4

Repositories

Showing 10 of 113 repositories
  • larch Public

    Inference and manipulation of history DAGs

    matsengrp/larch’s past year of commit activity
    C++ 2 MIT 2 14 2 Updated Mar 17, 2025
  • ola-encoding Public
    matsengrp/ola-encoding’s past year of commit activity
    Python 0 0 0 0 Updated Mar 12, 2025
  • netam Public

    Neural networks to model BCR affinity maturation

    matsengrp/netam’s past year of commit activity
    Python 1 0 8 1 Updated Mar 6, 2025
  • dasm-json-database-1 Public

    Database of dms-viz jsons for DASM model (human only).

    matsengrp/dasm-json-database-1’s past year of commit activity
    0 0 0 0 Updated Mar 5, 2025
  • SARS2-synonymous-mut-rate Public

    Using mutation counts from UShER to estimate SARS-CoV-2's mutation rate

    matsengrp/SARS2-synonymous-mut-rate’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 25, 2025
  • dnsm-json-database Public
    matsengrp/dnsm-json-database’s past year of commit activity
    Python 0 0 0 0 Updated Feb 23, 2025
  • phylostability Public
    matsengrp/phylostability’s past year of commit activity
    Python 1 0 0 0 Updated Feb 13, 2025
  • antigen Public Forked from trvrb/antigen

    Simulating virus evolution and epidemiology

    matsengrp/antigen’s past year of commit activity
    Mathematica 1 8 2 0 Updated Feb 12, 2025
  • thrifty-experiments-1 Public
    matsengrp/thrifty-experiments-1’s past year of commit activity
    Jupyter Notebook 1 0 1 1 Updated Feb 10, 2025
  • phip-flow Public

    A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets

    matsengrp/phip-flow’s past year of commit activity
    Python 11 MIT 7 0 0 Updated Feb 7, 2025
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