LCSKPOA

LCSKPOA: Enabling banded semi-global partial order alignments via efficient and accurate backbone generation through extended lcsk++.

Setting up / Requirements

Rust 1.65.0+ should be installed. Requires Rust nightly for SIMD

Usage

Download the repository.

git clone https://github.com/lorewar2/lcskpoa.git
cd LCSKPOA

Activate rust nightly for the package

rustup override set nightly

Replicate the results in paper:

cargo run --releae

How to cite

If you are using LCSKPOA in your work, please cite:

LCSKPOA: Enabling banded semi-global partial order alignments via efficient and accurate backbone generation through extended lcsk++