kaizhang
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SnapATAC2 Public
Single-cell epigenomics analysis tools
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MACS Public
Forked from macs3-project/MACSMACS -- Model-based Analysis of ChIP-Seq
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 29, 2024 -
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scib-pipeline Public
Forked from theislab/scib-pipelineSnakemake pipeline that works with the scIB package to benchmark data integration methods.
Python MIT License UpdatedFeb 7, 2023 -
rust-n5 Public
Forked from aschampion/rust-n5Rust implementation of the N5 "Not HDF5" tensor file system format
Rust Apache License 2.0 UpdatedDec 6, 2022 -
SciFlow Public
Scientific workflow management
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bioinformatics-toolkit Public
A collection of bioinformatics algorithms
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haskell-igraph Public
Haskell bindings to igraph library.
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matrix-sized Public
Generic matrix with statically known size and bindings to C++ linear algebra libraries (Eigen, Spectra).
C++ BSD 3-Clause "New" or "Revised" License UpdatedAug 20, 2022 -
bavaria Public
Forked from BIMSBbioinfo/bavariaBatch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq datasets
Jupyter Notebook Other UpdatedJun 18, 2022 -
hdf5-rust Public
Forked from aldanor/hdf5-rustHDF5 for Rust
Rust Apache License 2.0 UpdatedApr 14, 2022 -
DBPnet Public
Inferring cooperation of DNA binding proteins in 3D genome.
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anndata Public
Forked from scverse/anndataAnnotated data.
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 5, 2022 -
rust-bio Public
Forked from rust-bio/rust-bioThis library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
Rust MIT License UpdatedDec 3, 2021 -
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hpc-cluster Public
Automate the process of building HPC clusters.
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RFECS Public
http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002968
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ChromVAR Public
Haskell implementation of the chromVAR algorithm with constant memory usage.
Haskell BSD 3-Clause "New" or "Revised" License UpdatedMay 6, 2020 -
minimap2 Public
Forked from lh3/minimap2A versatile pairwise aligner for genomic and spliced nucleotide sequences
C Other UpdatedMay 1, 2020 -
pandoc-crossref Public
Forked from lierdakil/pandoc-crossrefPandoc filter for cross-references
Haskell GNU General Public License v2.0 UpdatedApr 9, 2020 -
stackage Public
Forked from commercialhaskell/stackage"Stable Hackage": vetted consistent packages from Hackage
Shell MIT License UpdatedFeb 22, 2020 -
drmaa Public
A very simple Haskell bindings to drmaa library.
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bbi Public
Tools for working with Big Binary Indexed files (bigBed/bigWig)
Haskell Other UpdatedMay 6, 2019 -
Taiji Public archive
This project has been moved to:
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clustering Public
fast clustering algorithms