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@genpat-it

GENPAT (Italian National Reference Centre for WGS of microbial pathogens)

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  1. spread spread Public

    Project based on GrapeTree, a fully interactive, tree visualization program within EnteroBase, which supports facile manipulations of both tree layout and metadata.

    CSS 6

  2. dist2mst dist2mst Public

    High-performance tool for constructing Minimum Spanning Trees from symmetric distance matrices. Features Numba-accelerated algorithms, parallel processing, and zero-distance grouping. Outputs MST i…

    Python 1

  3. genpat-dashboard genpat-dashboard Public

    GenPat-Dashboard web application

    JavaScript 1

  4. vcf2mst vcf2mst Public

    Hamming Distance based Minimum Spanning Tree from Samples vcf using graptree

    Perl 3

  5. TreeToCongruency TreeToCongruency Public

    Forked from Nicolas-Radomski/TreeToCongruency

    Script comparing two trees through a tanglegram and estimations of congruency metrics

    R

  6. grapetree-gis grapetree-gis Public

    Project based on GrapeTree, a fully interactive, tree visualization program within EnteroBase, which supports facile manipulations of both tree layout and metadata.

    JavaScript

Repositories

Showing 10 of 20 repositories
  • dist2mst Public

    High-performance tool for constructing Minimum Spanning Trees from symmetric distance matrices. Features Numba-accelerated algorithms, parallel processing, and zero-distance grouping. Outputs MST in standard Newick format.

    genpat-it/dist2mst’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 18, 2025
  • cgmlst-dists-py Public

    The python multithreaded version of the famous cgmlst-dists bioinformatic tool by Torsten Seemann

    genpat-it/cgmlst-dists-py’s past year of commit activity
    Python 0 0 0 0 Updated Mar 17, 2025
  • wiki-engine Public

    A Docker-based documentation system combining MkDocs and Word document generation.

    genpat-it/wiki-engine’s past year of commit activity
    Python 0 0 0 0 Updated Mar 11, 2025
  • spread Public

    Project based on GrapeTree, a fully interactive, tree visualization program within EnteroBase, which supports facile manipulations of both tree layout and metadata.

    genpat-it/spread’s past year of commit activity
    CSS 6 GPL-3.0 0 0 0 Updated Feb 19, 2025
  • mkdocs-packages Public

    Collection of MkDocs packages we use to build our documentation

    genpat-it/mkdocs-packages’s past year of commit activity
    JavaScript 0 0 0 0 Updated Feb 11, 2025
  • cohesive-ngsmanager Public
    genpat-it/cohesive-ngsmanager’s past year of commit activity
    Nextflow 0 AGPL-3.0 1 0 0 Updated Oct 18, 2024
  • cohesive Public
    genpat-it/cohesive’s past year of commit activity
    Groovy 0 AGPL-3.0 0 0 0 Updated Jul 31, 2024
  • cohesive-jenkins Public
    genpat-it/cohesive-jenkins’s past year of commit activity
    0 AGPL-3.0 1 0 0 Updated May 31, 2024
  • cohesive-images Public
    genpat-it/cohesive-images’s past year of commit activity
    0 0 0 0 Updated May 31, 2024
  • wiki-engine-old Public archive
    genpat-it/wiki-engine-old’s past year of commit activity
    Dockerfile 0 GPL-3.0 0 0 0 Updated May 31, 2024
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