Update from... 2012! #1
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…ilenames in the example
…HOST (for Galaxy)
1. Added a new option, "allow_overlapping_genes", which directs gnest to skip the filtering step in which only one gene is retained when multiple gene annotations overlap. 2. Fixed overlapping genes filter. 3. Allow a mix of non-integer and integer expression data.
…e for incorporating G-NEST into Galaxy.
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These changes were added in AngieHinrichs' fork and need to be folded back in here.