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  • Frameshift Genomics
  • Boston, MA

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@marthlab @gkno @iobio @frameshiftgenomics @CDDRC

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Javascript local VCF and Tabix index file parsing and processing

JavaScript 5 1 Updated Aug 2, 2016

Streaming Bam Stats utility based on Bamtools Stats

C++ 4 3 Updated Feb 3, 2021

a lightweight db framework for exploring genetic variation.

Python 319 119 Updated Apr 28, 2020

Shortly: a Serverless Pastebin Service - All Data is Stored in the URL

CoffeeScript 138 24 Updated Oct 3, 2015

The gkno launcher for executing tools or pipelines

Python 31 7 Updated Jan 17, 2017
JavaScript 1 Updated Dec 20, 2011
JavaScript 1 Updated Mar 12, 2012

blog

Ruby 1 Updated Feb 12, 2012

It's a presentation framework based on the power of CSS3 transforms and transitions in modern browsers and inspired by the idea behind prezi.com.

JavaScript 37,733 6,655 Updated Feb 5, 2025

A polyfill for implementing the HTML5 <input type="color"> element in browsers that do not currently support it.

JavaScript 32 12 Updated Dec 20, 2011

Ultra Lightweight NGS (BAM/VCF) Server

C++ 7 1 Updated Jul 9, 2012

A scalable, event-driven JavaScript architecture for developing component-based applications.

JavaScript 2,934 255 Updated Apr 17, 2017

A scripting framework that replaces rake and sake

Ruby 1 Updated Sep 20, 2011

This project is no longer maintained.

JavaScript 13 Updated Oct 11, 2012

web app to make genomic figures

JavaScript 2 Updated Aug 31, 2012

Modern HTML Presentations

JavaScript 5,423 613 Updated Jan 28, 2019

JavaScript object with the user's system information.

JavaScript 210 42 Updated Jun 16, 2017

Javascript DAG (Directed Acyclic Graph) Data Structure

JavaScript 2 1 Updated Mar 3, 2011

This plugins is intended to wrap the common software used for Next Generation Sequencing data

Ruby 28 12 Updated Jan 18, 2023

Tools for scientific computation in Ruby

Ruby 1,000 79 Updated Feb 28, 2020

Bioruby plugin for reading, writing and manipulating assembly data

Ruby 4 1 Updated Jan 12, 2011

HTML5 canvas genomic graphics library

JavaScript 76 14 Updated May 6, 2019

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

JavaScript 281 114 Updated Jan 5, 2025

Core BioPerl code

Perl 1 1 Updated Jul 3, 2010

bioruby

Ruby 2 1 Updated Oct 9, 2010

Interactive web-based genome browser.

JavaScript 227 66 Updated Aug 28, 2019

JavaScript documentation generator for node using markdown and jsdoc

JavaScript 2,154 194 Updated Sep 7, 2022

C++ API & command-line toolkit for working with BAM data

C++ 423 154 Updated Jul 12, 2024

Core BioPerl 1.x code

Perl 304 184 Updated Apr 26, 2024

bioruby

Ruby 379 109 Updated Mar 7, 2025
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