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Pull requests list

Replace private jax modules with public API
#45 by joverlee521 was merged Dec 17, 2024 • Approved
Replace KeyArray with jax.Array
#44 by joverlee521 was merged Dec 17, 2024 • Approved
1
Adding temporal aggregation
#41 by marlinfiggins was merged Nov 8, 2024
pivot and var_names incompatible in VariantFrequencies
#39 by jbloom was merged Nov 8, 2024
Adding pre-commit hooks
#35 by marlinfiggins was merged May 29, 2024
First docs commit using sphinx
#34 by marlinfiggins was merged May 6, 2024
Adding time-varying fitness hierarchical model
#30 by marlinfiggins was merged Feb 9, 2024
4 tasks done
Updating Array types
#29 by marlinfiggins was merged Sep 26, 2023
Reparameterizing Hierarchical MLR model
#27 by marlinfiggins was merged Jun 29, 2023
Tweaking hierarhical model
#26 by marlinfiggins was merged Jun 22, 2023
Adding forecasts to Hierarchical MLR model
#25 by marlinfiggins was merged Jun 5, 2023
Add forecast dates to metadata
#23 by marlinfiggins was merged Apr 6, 2023
Allow users to export forecasts tidily
#22 by marlinfiggins was merged Apr 6, 2023
Properly match generation times
#21 by marlinfiggins was merged Apr 6, 2023
Allowing Multinomial Logistic Regression to use Dirichlet-Multinomial likelihood
#20 by marlinfiggins was merged Apr 5, 2023
Fixing caching behavior for testing CI
#19 by marlinfiggins was merged Jan 25, 2023
Adding automated testing on PRs and pushes to main
#18 by marlinfiggins was merged Jan 25, 2023
1 task done
Add simulation functions for model test cases
#17 by marlinfiggins was merged Jan 25, 2023
3 tasks done
Renewal model updates
#16 by marlinfiggins was merged Feb 1, 2023
5 tasks done
Simplifying forecasting with MLR
#15 by marlinfiggins was merged Jan 13, 2023
Mutational fitness model
#14 by marlinfiggins was merged Jan 13, 2023
Fixing issue where auxilary sites break ef.init_to_map
#13 by marlinfiggins was merged Jan 10, 2023
Fixing output of growth-advantage-loc in hierarchical model
#12 by marlinfiggins was merged Jan 10, 2023
Adding plotting classes for simplified analysis enhancement New feature or request
#9 by marlinfiggins was merged Jan 6, 2023
3 tasks done
First pass at BlackJax NUTS implementation enhancement New feature or request
#8 by marlinfiggins was merged Jan 13, 2023
ProTip! What’s not been updated in a month: updated:<2025-02-28.