v0.0.20

This major release includes functionalities to compute ms1, m2 features on mzml files.

What's Changed

• Improve parameters, logging, examples files and feature detection for mzmml statistics. by @ypriverol in #47
• Fix bruker issues. by @ypriverol in #48
• MS1Feature Finder output to parquet. by @ypriverol in #49
• Dev by @ypriverol in #50
• Update github actions, more examples added, remove filtering of features based on percentile tic. by @ypriverol in #51

Full Changelog: v0.0.19...v0.0.20

v0.0.19

What's Changed

• Support for DIA-NN 2.0 by @daichengxin in #44
• fixed error and clean codes by @daichengxin in #45
• Remove feature components in favor of quantms-rescoring by @ypriverol in #46

Full Changelog: v0.0.18...v0.0.19

v0.0.18

What's Changed

• Dev by @ypriverol in #41
• make diann2mztab optional for large-scale datasets by @daichengxin in #42
• major changes in mztab for large datasets by @ypriverol in #43
  Full Changelog: v0.0.17...v0.0.18

v0.0.17

What's Changed

• major refactoring about ms2rescore and pyarrow by @ypriverol in #39
• ms2rescore removed from the library. Library move to https://github.com/bigbio/quantms-rescoring
• mzML stremming use in favor of loading files in memory.
• standardization of mzml info parquet using quantms.io properties.

Full Changelog: v0.0.16...v0.0.17

v0.0.16

What's Changed

• Fixed ms2rescore bugs by @daichengxin in #36
• Major improvements of mzml statistics by @ypriverol in #37
• forcing OpenMS version higher than 2.4.0 by @ypriverol in #38
  Full Changelog: v0.0.15...v0.0.16

v0.0.15

What's Changed

• Support for version 1.9.2 by @ypriverol in #33
• ms2rescore fix version for DeepLC by @ypriverol in #34
• forcing more versions for compatibility. by @ypriverol in #35

Full Changelog: v0.0.12...v0.0.15

v0.0.12

What's Changed

• fixed diann scan and add ms2rescore arg by @daichengxin in #28
• fixed bugs when RT matched and DIA-NN Scan matched are inconsistent by @daichengxin in #30
• upgrade the sdrf-pipelines 0.0.29 -> 0.0.30 by @ypriverol in #29
• sdrf-pipelines 0.0.30 -> 0.0.31 by @ypriverol in #32

Full Changelog: v0.0.11...v0.0.12

v0.0.11

Full Changelog: v0.0.10...v0.0.11

PR included some bug fixes #28:

• Fixed some errors with USI generation for DIA-NN
• Expose parameters from ms2rescore

v0.0.10

What's Changed

• fixed tmt bug by @daichengxin in #26
• Dev by @ypriverol in #27

Full Changelog: v0.0.9...v0.0.10

v0.0.9

What's Changed

• psm conversion tool updated by @ypriverol in #25

Full Changelog: v0.0.8...v0.0.9