Skip to content

Issues: benjjneb/dada2

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

128 Open 1,916 Closed
128 Open 1,916 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Entire groups of microbes disappeared from dataset
#2098 opened Mar 19, 2025 by PaulHR1993
TrunLen - differences between setting it at zero versus full read length
#2097 opened Mar 18, 2025 by andrebolerbarros
2
Lengths ASVs V3-V4 region
#2096 opened Mar 18, 2025 by andrebolerbarros
QualityProfile, error rate and TruncLen optimization
#2095 opened Mar 12, 2025 by luigallucci
Error: package or namespace load failed for ‘dada2’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '...../dada2.so'
#2094 opened Mar 12, 2025 by PPpissar
dada2 on single-end ITS amplicons - singletons possible
#2093 opened Mar 12, 2025 by ARW-UBT
Dealing with NovaSeq - Several Approaches
#2092 opened Mar 6, 2025 by andrebolerbarros
6
Comparing taxonomic assignement across merging methods
#2091 opened Mar 5, 2025 by alexis-roy5
1
Advice on memory usage?
#2090 opened Mar 4, 2025 by bl24
3
Failing to re-alligning sequences with same truncLen parameters
#2089 opened Mar 4, 2025 by Debora6991
NEED HELP on how to proceed with Pacbio Kinnex dataset
#2088 opened Feb 27, 2025 by magicprotoss
2
The number of primer hits much more less than the total reads.
#2087 opened Feb 26, 2025 by MizanurRahman24
4
Inconsistent ASV inference when running samples together vs. individually with default (pool=FALSE, selfConsist=FALSE) settings.
#2085 opened Feb 20, 2025 by saharbagheri
8
REANALYSING DATASET IN DADA2- Taxa assign
#2084 opened Feb 18, 2025 by Ka-di1
5
Incorrect annotations with custom reference database
#2083 opened Feb 17, 2025 by kodnerlab
1
binnedQualErrfun function test
#2081 opened Feb 13, 2025 by luigallucci
2
getting error message: Error in derepFastq(fls[[i]], qualityType = qualityType) : Not all provided files exist.
#2079 opened Jan 31, 2025 by DN7-boop
4
filterAndTrim with ITS data
#2078 opened Jan 23, 2025 by mya-darsan
1
Compatibility of DADA2 for ITS amplicon reads
#2077 opened Jan 20, 2025 by UniAlberta
2
Help with troubleshooting qiime dada2 denoise-paired error. [NAs produced by integer overflow...is there a fix?]
#2076 opened Jan 15, 2025 by aron1014
6
Explaining discrepancies in microbiome composition caused by changes in sequence files and denoising methods.
#2075 opened Jan 13, 2025 by emankhalaf
2
R Encountering Issues When Processing PacBio Revio 16S Data with the DADA2 Pipeline
#2074 opened Jan 9, 2025 by emankhalaf
15
Following ITS dada2 cutadapt trimming, why is a minimum length of 50 used?
#2073 opened Jan 8, 2025 by kdbchau
3
What do the filtN files do?
#2072 opened Jan 8, 2025 by kdbchau
7
Problem with long vectors using Pacbio long reads
#2066 opened Dec 17, 2024 by BigFatPandar
4
ProTip! Add no:assignee to see everything that’s not assigned.