New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Fix abyss-pe to pass N parameter as expected #487

Merged

lcoombe merged 1 commit into master from distance_est_n

Oct 18, 2024

Member

lcoombe commented Oct 18, 2024

N was not passed to DistanceEst as expected
- When only PE reads specified, -n was propagated from the contig stage
- When MP reads were specified, if a range was specified, this was passed to -n causing a failure (reported in DistanceEst: invalid option: `-n15-20' #486)
Solution here: Ensure that the scaffold parameters are properly passed to DistanceEst for both read inputs, using the lower number if a range is provided


          Fix abyss-pe to pass N parameter as expected

65f824a

lcoombe assigned jwcodee

jwcodee approved these changes

View reviewed changes

Member

jwcodee left a comment

Thanks.

lcoombe merged commit 9ef1f4b into master

13 checks passed

lcoombe deleted the distance_est_n branch

October 18, 2024 19:29

lcoombe mentioned this pull request

DistanceEst: invalid option: `-n15-20' #486

Closed

4 tasks

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet