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Pull requests list

Script: Add convert .gt file format to .csv.gz + docs
#62 by absternator was merged Mar 25, 2025 Loading…
6
{commit_message}
#61 by absternator was closed Mar 14, 2025 Loading…
Speed up subgraph creation
#60 by absternator was merged Mar 18, 2025 Loading…
5
Bacpop-208 Microreact + netowork in 1 poppunk call
#59 by absternator was merged Mar 6, 2025 Loading…
11
Bacpop-211 - add Streptococcus pyogenes
#58 by absternator was merged Jan 29, 2025 Loading…
3
Bacpop-209 Beebop_py: AMR info to Microreact
#57 by absternator was merged Jan 21, 2025 Loading…
6
Fix pytest poppunk build action
#56 by absternator was closed Jan 10, 2025 Loading…
Bug: Create new output folder when running poppunk
#55 by absternator was merged Jan 13, 2025 Loading…
Bacpop-207 Add info_csv file for metadata
#54 by absternator was merged Jan 16, 2025 Loading…
5
Bacpop-205 Fix network
#53 by absternator was merged Jan 14, 2025 Loading…
25
test: small csv from nicj into microreact
#52 by absternator was closed Dec 19, 2024 Loading…
test
#51 by absternator was closed Dec 4, 2024 Loading…
Development image to test PopPunk branches
#50 by absternator was merged Dec 5, 2024 Loading…
8
Bacpop-202 Assign fallback to refs to db
#49 by absternator was merged Dec 6, 2024 Loading…
28
Bacpop-186 v9 db support
#48 by absternator was merged Jan 28, 2025 Loading…
9
Bacpop-201 Stream microreact per cluster
#47 by absternator was merged Nov 19, 2024 Loading…
8
Bacpop 190 move dbs
#46 by absternator was merged Oct 9, 2024 Loading…
Bacpop-192 multi-species
#45 by absternator was merged Oct 9, 2024 Loading…
6
Bacpop-190 Move databses to mrcdata
#44 by absternator was merged Oct 8, 2024 Loading…
8
poc multidb
#43 by absternator was merged Oct 9, 2024 • Draft
Bacpop-187 lockdown poppunk
#42 by absternator was merged Sep 10, 2024 Loading…
3
feat: update to v9 db
#41 by absternator was closed Nov 5, 2024 Loading…
Bacpop-174: Return failed samples from qcreport
#40 by absternator was merged Jul 9, 2024 Loading…
9
Bacpop-113: add qc to assign clusters
#39 by absternator was merged Jul 3, 2024 Loading…
2
Bacpop-159 Use V8 DB and csv
#38 by absternator was merged Mar 26, 2024 Loading…
2
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