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@WayScience

The Way Lab

The Way Lab at CU Anschutz

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  1. phenotypic_profiling phenotypic_profiling Public

    Machine learning for predicting 15 single-cell phenotypes from cell morphology profiles

    Jupyter Notebook 2 3

  2. nf1_schwann_cell_painting_data nf1_schwann_cell_painting_data Public

    This repository contains all the modules to perform image-based analysis with CellProfiler on NF1 Schwann cell data.

    Jupyter Notebook 5 5

  3. pyroptosis_signature_image_profiling pyroptosis_signature_image_profiling Public

    This repository contains the pipelines used to analyze the data sets from the Interstellar collaboration.

    Jupyter Notebook 3 3

  4. coSMicQC coSMicQC Public

    Single cell Morphology Quality Control (coSMicQC)

    Python 7 3

  5. predicting-cell-injury-compounds predicting-cell-injury-compounds Public

    Processing cell-injury profiles using Pycytominer to generate selected features profiles for training a multi-class regression model to identify cellular injury.

    Jupyter Notebook 1 2

  6. CPBS7601 CPBS7601 Public

    Course on computing skills in biomedical informatics

    Jupyter Notebook 9

Repositories

Showing 10 of 78 repositories
  • NF1_3D_organoid_profiling_pipeline Public
    WayScience/NF1_3D_organoid_profiling_pipeline’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 2 7 4 Updated Mar 19, 2025
  • coSMicQC Public

    Single cell Morphology Quality Control (coSMicQC)

    WayScience/coSMicQC’s past year of commit activity
    Python 7 BSD-3-Clause 3 19 1 Updated Mar 18, 2025
  • pyroptosis_live-cell_timelapse Public
    WayScience/pyroptosis_live-cell_timelapse’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 1 0 Updated Mar 17, 2025
  • CytoDataFrame Public

    An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.

    WayScience/CytoDataFrame’s past year of commit activity
    Python 1 BSD-3-Clause 2 14 1 Updated Mar 17, 2025
  • pyroptosis_signature_data_analysis Public

    Analysis repository for the pyroptosis morphology map

    WayScience/pyroptosis_signature_data_analysis’s past year of commit activity
    Jupyter Notebook 3 BSD-3-Clause 1 15 0 Updated Mar 14, 2025
  • JUMP-single-cell Public

    Single cell analysis of the JUMP Cell Painting consortium pilot data (cpg0000)

    WayScience/JUMP-single-cell’s past year of commit activity
    Jupyter Notebook 4 BSD-3-Clause 5 2 0 Updated Mar 13, 2025
  • nuclear_speckles_analysis Public
    WayScience/nuclear_speckles_analysis’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 2 0 Updated Mar 13, 2025
  • nf1_schwann_cell_morphology_signature Public

    This repository contains all the modules to split and train a binary classification model to predict NF1 null and wildtype genotype.

    WayScience/nf1_schwann_cell_morphology_signature’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 2 1 1 Updated Mar 12, 2025
  • CFReT-screen-mAP-analysis Public

    Analysis notebooks applying mean average Precision (mAP) to the CFReT screen image-based profiles dataset.

    WayScience/CFReT-screen-mAP-analysis’s past year of commit activity
    Jupyter Notebook 0 1 3 1 Updated Mar 12, 2025
  • nf1_schwann_cell_painting_data Public

    This repository contains all the modules to perform image-based analysis with CellProfiler on NF1 Schwann cell data.

    WayScience/nf1_schwann_cell_painting_data’s past year of commit activity
    Jupyter Notebook 5 CC0-1.0 5 6 0 Updated Mar 11, 2025
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