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@UofS-Pulse-Binfo

Pulse Bioinformatics, University of Saskatchewan

Our group has a strong focus on creating flexible, re-usable open-source software during the course of our work.

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  1. analyzedphenotypes Public

    Tripal/Drupal support for analyzed phenotypic data including data loaders, exporters, trait pages and summaries on germplasm pages.

    PHP 1

  2. nd_genotypes Public

    Drupal/Tripal: Tripal interface for Chado Natural Diversity Genotypic data.

    PHP 4 1

  3. genotypes_loader Public

    A Drush-based loader for VCF files that follows the genotype storage rules outlined by ND genotypes.

    PHP 1 2

  4. tripal_qtl Public

    Provides additional fields and data import which provide support for quantitative trait loci. Additionally, it integrates with Tripal Map through shared vocabulary terms and data storage models.

    PHP

  5. vcf_filter Public

    Form interface so users can custom filter existing VCF files and export in a variety of formats.

    PHP 1

Repositories

Showing 10 of 38 repositories
  • uofs-pulse-binfo.github.io Public

    Provides the code for the Pulse Bioinformatics, University of Saskatchewan organization website.

    JavaScript 0 MIT 0 0 0 Updated Jan 28, 2025
  • tripal_germplasm_importer Public

    Tripal 3 importer for saving germplasm into chado stock tables.

    PHP 1 GPL-3.0 0 2 0 Updated Jun 27, 2024
  • tripal_ws_brapi Public
    PHP 0 0 4 0 Updated Jun 27, 2024
  • tripal_qtl Public

    Provides additional fields and data import which provide support for quantitative trait loci. Additionally, it integrates with Tripal Map through shared vocabulary terms and data storage models.

    PHP 0 GPL-2.0 0 4 0 Updated Jun 27, 2024
  • nd_genotypes Public

    Drupal/Tripal: Tripal interface for Chado Natural Diversity Genotypic data.

    PHP 4 GPL-2.0 1 14 (1 issue needs help) 0 Updated Jun 27, 2024
  • tripal_bibtex Public

    A BibTEX importer for Tripal Publications.

    PHP 2 GPL-3.0 2 2 0 Updated Jun 27, 2024
  • helium_exporter Public

    Provides a data export of germplasm and phenotypic data for visualization using Helium.

    PHP 0 0 0 0 Updated Jun 11, 2024
  • lims_rawseq Public

    Drupal/Tripal: Provides a simple node type for recording Sequencing Run details.

    PHP 0 0 3 0 Updated Mar 14, 2024
  • vcf_filter Public

    Form interface so users can custom filter existing VCF files and export in a variety of formats.

    PHP 1 GPL-2.0 0 13 0 Updated Feb 12, 2024
  • kp_searches Public

    Provides custom search functionality for KnowPulse.

    PHP 0 GPL-2.0 0 0 0 Updated Jan 26, 2024
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