MedSDoH (Medical Social Determinants of Health)

Installation Guide

1. Clone the Repository

Clone the project repository and navigate to the project directory:

git clone https://github.com/OHNLP/MedSDoH.git
cd MedSDoH

2. Set Up a Python Environment

It is recommended to use a Conda virtual environment to prevent conflicts with your existing Python setup.

1. Create a new Conda environment using the provided environment.yml file:

   conda env create -f environment.yml

2. Activate the newly created environment:

   conda activate med_sdoh

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SDoH Category Definitions

Refer to the SDoH category definitions for details on the classification used in this study.

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Annotation and Results Visualization

For manual annotation or reviewing annotation results, use MedTator.

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Running the model

Run the provided Jupyter notebook.

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Contribution Guidelines

If you plan to contribute to MedSDoH, follow these steps:

1. Fork the repository and create a new branch for your changes:

git checkout -b your-branch-name

2. Install development dependencies:

pip install .[dev]

3. Set up pre-commit hooks:

pre-commit install

4. Commit your changes and open pull request with a clear description of changes.

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Contact: [email protected]