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1. DiffusionModels DiffusionModels Public

   Implementing diffusion models from original research papers using PyTorch from scratch.

   Python 3

2. grn-designer grn-designer Public

   Optimizing Gene Regulatory Networks (GRNs) for spatial pattern formation using evolutionary and gradient-based methods with heterogeneous initial conditions.

   Jupyter Notebook 2 1

3. deep-learning deep-learning Public

   Deep learning models built from scratch, including MLPs, CNNs, RNNs, LSTMs, Transformers, and GPT-2, with implementations of optimization and regularization techniques.

   Jupyter Notebook 3

4. smartsolve smartsolve Public

   A python machine learning library

   Python 9 2

5. biostoch biostoch Public

   A Python library for simulating biological and chemical systems using deterministic and stochastic methods, including Euler’s method, Runge-Kutta, SSA, Tau-Leaping, and CLE.

   Jupyter Notebook 3

6. protein-fold protein-fold Public

   Exploring experimental and computational methods for understanding protein structures, including comparative analysis and insights into techniques like AlphaFold and NMR.

   Python 4