goesHyde_mdd_rnaseq

JHPCE

Location: /dcs04/lieber/lcolladotor/hydeGoes_LIBD3010/goesHyde_mdd_rnaseq

Name	Name	Last commit message	Last commit date
Latest commit lahuuki Run standard t-test on all data Aug 27, 2024 08eda63 · Aug 27, 2024 History 1,174 Commits
data	data	Add data files	Oct 28, 2021
deconvolution	deconvolution	Run standard t-test on all data	Aug 27, 2024
differential_expression	differential_expression	Add go_enrichment_FSG.R	Jan 23, 2024
eqtl	eqtl	update index	Sep 12, 2023
exprs_cutoff	exprs_cutoff	Add update_snpPCs.R	Oct 28, 2021
genotype_data	genotype_data	Fix GitHub history. Re-make the commit we lost with git push --force …	Oct 11, 2021
genotype_data_old	genotype_data_old	git mv genotype_data/ genotype_data_old/	Sep 3, 2020
leafcutter	leafcutter	fix missing fuction definition	Jun 20, 2024
predixcan_pipeline	predixcan_pipeline	Version control file changes by Fernando and clean up git status	Oct 28, 2021
preprocessed_data	preprocessed_data	Version control files made by others	Apr 1, 2020
preprocessed_data_old	preprocessed_data_old	Version control files made by others	Apr 1, 2020
prs	prs	Version control file changes by Fernando and clean up git status	Oct 28, 2021
qc_checks	qc_checks	Add plots	Oct 29, 2021
synapse	synapse	Add qc plots	Oct 28, 2021
trash	trash	Move old logs to trash	Sep 25, 2020
twas	twas	added more to initial TWAS gitignore	May 26, 2021
twas_both	twas_both	adding the version of generate_twas_plots where failed hsq genes are …	Sep 30, 2021
twas_mdd	twas_mdd	add gitignore file	Mar 25, 2022
wgcna	wgcna	add abs(ERCC) term and use precomputed qSV_mat	Dec 8, 2021
.gitignore	.gitignore	Update .gitignore	Nov 3, 2021
.gitmodules	.gitmodules	Add a git submodule for leafcutter	Jun 6, 2022
MDD_Amyg_sACC_twas_z.xlsx	MDD_Amyg_sACC_twas_z.xlsx	Version control file changes by Fernando and clean up git status	Oct 28, 2021
README.md	README.md	Update JHPCE location	Oct 18, 2022
copy_data.sh	copy_data.sh	cp /dcl01/lieber/RNAseq/Datasets/BrainGenotyping_2018/SampleFiles/bra…	Sep 8, 2020
depseq_samples_and_de.pptx	depseq_samples_and_de.pptx	Version control files made by others	Apr 1, 2020
goesHyde_mdd_rnaseq.Rproj	goesHyde_mdd_rnaseq.Rproj	update permissions	Apr 2, 2020
inferred_strandness_pattern.txt	inferred_strandness_pattern.txt	Version control files made by others	Apr 1, 2020
master.sh	master.sh	Fix GitHub history. Re-make the commit we lost with git push --force …	Oct 11, 2021

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goesHyde_mdd_rnaseq

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