Open source tools for computational pathology - Nature BME

Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifying subject types.

Visiopharm to QuPath migration scripts

Tool Shed repositories maintained by the Intergalactic Utilities Commission

Rshiny app where the EMC absolute risk model can be used to predict metastasis in cSCC patients.

Non-reproducible, local tools that were installed to cn029

A collection of Galaxy-related training material

Github repository for the publication "Weighted metrics are required when evaluating the performance of prediction models in nested case-control cohorts"

Ansible playbook for managing UseGalaxy.eu infrastructure.

Fast and accurate gene fusion detection from RNA-Seq data

Conda recipes for the bioconda channel.

Quality control tools for nanopore sequencing data