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niklasmueboe
testing
Nov 25, 2024
65c1827 · Nov 25, 2024

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env
env
May 30, 2024
.gitignore
.gitignore
May 30, 2024
1_LIBD_DLPFC.ipynb
1_LIBD_DLPFC.ipynb
May 30, 2024
1_SDMbench_download.ipynb
1_SDMbench_download.ipynb
May 30, 2024
2_Banksy.ipynb
2_Banksy.ipynb
Nov 21, 2024
2_BayesSpace_DLPFC.ipynb
2_BayesSpace_DLPFC.ipynb
May 30, 2024
2_Leiden_DLPFC.ipynb
2_Leiden_DLPFC.ipynb
Nov 21, 2024
2_Leiden_SDMbench_dataset.ipynb
2_Leiden_SDMbench_dataset.ipynb
Nov 21, 2024
2_SpaGCN_DLPFC.ipynb
2_SpaGCN_DLPFC.ipynb
May 30, 2024
2_SpatialEmbedding_effect.ipynb
2_SpatialEmbedding_effect.ipynb
Nov 21, 2024
2_SpiceMix.ipynb
2_SpiceMix.ipynb
Nov 21, 2024
2_X_with_SpatialLeiden.ipynb
2_X_with_SpatialLeiden.ipynb
Nov 21, 2024
3_Fig.ipynb
3_Fig.ipynb
Nov 25, 2024
3_Fig_schematic.ipynb
3_Fig_schematic.ipynb
May 30, 2024
3_SuppFigs.ipynb
3_SuppFigs.ipynb
Nov 21, 2024
LICENSE
LICENSE
Apr 13, 2024
README.md
README.md
Aug 24, 2024
benchmark.py
benchmark.py
Nov 21, 2024
downloads.tsv
downloads.tsv
May 30, 2024
spicemix.py
spicemix.py
Nov 21, 2024
utils.py
utils.py
Nov 21, 2024

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SpatialLeiden - Study

Code to reproduce results for the study

Müller-Bötticher, N., Sahay, S., Eils, R., and Ishaque, N. "SpatialLeiden - Spatially-aware Leiden clustering" bioRxiv (2024) https://doi.org/10.1101/2024.08.23.609349

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doi.org/10.1186/s13059-025-03489-7

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