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@ENCODE-DCC

ENCODE DCC

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  1. encoded Public

    Metadata database for ENCODE project

    JavaScript 111 51

  2. snovault Public

    The SnoVault general purpose hybrid object-relational database

    Python 16 8

  3. checkfiles Public

    Files are checked to see if the MD5 sum (both for gzipped and ungzipped) is identical to the submitted metadata, as well as run through the validateFiles program from jksrc.

    Python 2

  4. pyencoded-tools Public

    Jupyter Notebook 10 13

  5. WranglerScripts Public

    Collection of scripts used by the wranglers to interact with the servers

    Python 5 4

Repositories

Showing 10 of 124 repositories
  • encoded Public

    Metadata database for ENCODE project

    JavaScript 111 MIT 51 4 54 Updated Mar 18, 2025
  • genomic-data-service Public

    Flask based web service providing genomic region search, based on regulomedb.org

    Python 5 MIT 2 1 1 Updated Feb 19, 2025
  • geo-submission Public
    Python 3 MIT 2 0 1 Updated Dec 3, 2024
  • regulome-encoded Public

    Temp repo for regulome development

    JavaScript 1 MIT 4 2 16 Updated Nov 15, 2024
  • checkfiles Public

    Files are checked to see if the MD5 sum (both for gzipped and ungzipped) is identical to the submitted metadata, as well as run through the validateFiles program from jksrc.

    Python 2 MIT 0 0 1 Updated Oct 2, 2024
  • kentUtils Public

    UCSC command line bioinformatic utilities

    C 178 95 15 1 Updated Jul 31, 2024
  • atac-seq-pipeline Public

    ENCODE ATAC-seq pipeline

    Python 407 MIT 174 91 2 Updated Jul 18, 2024
  • snovault Public

    The SnoVault general purpose hybrid object-relational database

    Python 16 MIT 8 2 28 Updated Mar 7, 2024
  • chip-seq-pipeline2 Public

    ENCODE ChIP-seq pipeline

    Python 262 MIT 120 52 0 Updated Feb 15, 2024
  • hic-pipeline Public

    HiC uniform processing pipeline

    WDL 60 MIT 23 5 2 Updated Nov 8, 2023
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