AGVis Update 4.0 (#72)

* Legend.js

* Window.js

* Window.js

* Updating Window.js comments

* Updating CanvasLayer.js comments

* Added CommunicationLayer.js header comment.

* Overhauling developer comments

* Updating ContMulti.js comments

* Dev comments

* Dev comments

* Dev comments

* LayerControl.js Comments

* CanvasLayer comments

* ContMulti.js comments

* NDArray comments

* Fixed header comment formatting

* Fixed header comment formatting

* PlaybackControl.js Comments

* Updating PlaybackControl.js comments

* PlayMulti.js comments

* PlayMulti.js comments

* SearcLayer.js Comments

* TimeBox.js Comments

* TimeBox.js Comments

* TopMulti.js comments

* TopMulti.js comments

* Finishing touches

* Finishing touches

* Added windows support for the agvis run command

* Updated usage documentation for Windows

* Setting up tests folder

* Runs server start command from the app.py directory

* basic test setup

* updated requirements

* updating requirements

* Initial restructure of AGVis backend

* AGVis backend restructure

* Finished backend restructure. Added dev mode.

* fixed typo

* fixed typo in go.sh

* Updated agvis repository Docker uses

* Fixed agvis pip install in Docker container

* Added shell=False to subprocess

* Changed subprocess command for testing

* Disabled running from directory. Currently breaks Docker.

* reenabled popen for subprocess

* reenabled popen for subprocess

* Fixed Docker issue. Added ability to build different branches using ./go.sh build <BRANCH_NAME>

* removed ! from go.sh

* Removed all syntax errors relating to an extra ! at the end

* Cleaned up object oriented implementation of flask app

* Testing Web App

* Writing tests

* tests

* conftest

* dime testing

* Added header comments. Finished initial dime_client test for agvis

* Updated test name

* disabled docker test, looking into js testing

* adding tests for web

* client tests

* removed redundant test

* Added header comment and removed unused imports

* Created docker test file

* debug ./go.sh file not being found

* debug ./go.sh file not being found

* debug ./go.sh file not being found

* Added checking out of code

* updated go.sh script to include docker testing

* removed interactive tag

* Disabling basic dime testing. Will keep the file in case it is needed in the future, but testing it here is has both project design and bug problems.

* added PR unit test protection for master

* Custom Flask Configurations for AGVis

* Include pip upgrade in Dockerfile

* Update citation

* Update copyright

* Updated max zoom

* Rename test.yml to pythonapp.yml

Conform with rest of LTB.

* Update pythonapp.yml

* Update dependency versions on pythonapp.yml

* Added linting with flake8

* Remove flake 8 until its recommended fixes are corrected.

* Publish Python to PyPI in pythonapp.yml

* Fixed broken tests. Added agvis selftest functionality

* Fixing last unittest

* Removing problematic test working locally but not on github

* Cleaning up code for codacy

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Co-authored-by: Jinning Wang <[email protected]>

Typo

Update release notes

Update release-notes

Update release notes

Added the pictures to the new documentation