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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 25 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 9 4

  4. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    Python 7

  5. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  6. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

Repositories

Showing 10 of 367 repositories
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 25 MIT 17 40 4 Updated Mar 21, 2025
  • aind-analysis-arch-job-manager Public

    capsule that registers, triggers, and manages analysis jobs for aind-analysis-arch

    AllenNeuralDynamics/aind-analysis-arch-job-manager’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 21, 2025
  • aind-data-schema-models Public

    Data models used in aind-data-schema

    AllenNeuralDynamics/aind-data-schema-models’s past year of commit activity
    Python 0 MIT 3 6 1 Updated Mar 21, 2025
  • aind-analysis-arch-pipeine-dynamic-foraging Public

    CO pipeline for dynamic foraging (V2.0)

    AllenNeuralDynamics/aind-analysis-arch-pipeine-dynamic-foraging’s past year of commit activity
    Nextflow 0 MIT 0 1 0 Updated Mar 21, 2025
  • aind-metadata-upgrader Public

    Upgrade JSON metadata from old versions of aind-data-schema

    AllenNeuralDynamics/aind-metadata-upgrader’s past year of commit activity
    Python 1 MIT 1 1 0 Updated Mar 21, 2025
  • aind-smartspim-classification Public

    Code for classifying the cell candidate outputs from aind-smartspim-segmentation within smartspim pipeline

    AllenNeuralDynamics/aind-smartspim-classification’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 21, 2025
  • aind-data-asset-indexer Public
    AllenNeuralDynamics/aind-data-asset-indexer’s past year of commit activity
    Python 0 MIT 0 7 (1 issue needs help) 0 Updated Mar 21, 2025
  • aind-hcr-data-transformation Public

    Transforms CZI files into Zarr. This is meant to be used in the data transfer service.

    AllenNeuralDynamics/aind-hcr-data-transformation’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Mar 21, 2025
  • dynamicrouting-decoding Public
    AllenNeuralDynamics/dynamicrouting-decoding’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 21, 2025
  • aind-beh-ephys-analysis Public
    AllenNeuralDynamics/aind-beh-ephys-analysis’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 21, 2025
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