System for Medical Concept Extraction and Linking
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Aug 12, 2024 - Python
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medical-informatics
Here are 44 public repositories matching this topic...
A generalizable application framework for segmentation, regression, and classification using PyTorch
machine-learning framework deep-learning regression pytorch medical-imaging classification segmentation data-augmentation biomedical-image-processing medical-informatics medical-image-analysis clinical-workflow
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Mar 7, 2025 - Python
Code and pretrained model for paper "Learning to Summarize Radiology Findings"
nlp natural-language-processing medicine summarization radiology medical-informatics medical-natural-language-processing
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Feb 26, 2019 - Python
An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters.
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Feb 4, 2025 - Python
Code for analyzing medical images saved as .dicom files
dicom mri-images dicom-images medical-image-computing dicom-files medical-informatics medical-image-processing mri-data
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Oct 12, 2018 - Python
FHIR Python Analysis Client and Kit (FHIRPACK) is a general purpose FHIR client that simplifies the access, analysis and representation of FHIR and EHR data using PANDAS, an ETL philosophy and a functional syntax. It was initially developed at the IKIM and HDDBS in Germany. Read more at https://zenodo.org/record/8006589
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Jul 6, 2023 - Python
OncoText is an information extraction service for breast pathology reports. It supports over 20 categories including DCIS, includes pretrained models, and supports flexible addition of new categories, new training data, and parsing new reports.
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Oct 22, 2018 - Python
nlp summarization medical-informatics bionlp question-summarization answer-summarization radiology-report-summarization
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May 1, 2022 - Python
Build a medical knowledge graph based on Unified Language Medical System (UMLS)
umls medical-informatics domain-knowledge unified-medical-language-system medical-knowledge-graph umls-graph
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Dec 25, 2021 - Python
GERNERMED is the first open neural NER model for medical entities designed for German data.
nlp natural-language-processing information-extraction spacy named-entity-recognition clinical-notes ner nlp-machine-learning medical-informatics
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Oct 20, 2023 - Python
CNMER: A model for Chinese medical named entity extraction
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Jul 26, 2018 - Python
GPTNERMED is a language model-generated, synthetic dataset and an open neural NER model for medical entities designed for German data.
nlp natural-language-processing german information-extraction spacy dataset transformer named-entity-recognition gpt clinical-notes ner language-model nlp-machine-learning medical-informatics
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Oct 5, 2023 - Python
EKG Analysis code for the MI3 intern group at CHOC Children's
python data-science machine-learning r signal-processing ecg feature-extraction logistic-regression wavelet svm-model principal-component-analysis medical-informatics wavelets ekg ekg-analysis atrial-fibrillation
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Feb 10, 2019 - Python
GERNERMED++ is a transfer-learning-based open neural NER model for medical entities designed for German data.
nlp natural-language-processing information-extraction spacy named-entity-recognition clinical-notes ner nlp-machine-learning slot-filling medical-informatics
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Oct 20, 2023 - Python
Python package for programmatic access to the National Biomedical Imaging Archive (NBIA) and The Cancer Imaging Archive (TCIA)
dicom api-client sorting-algorithms dicom-images oauth2-client medical-informatics tcia-dac idc tcia medical-imaging-datasets tcia-api medical-imaging-database nbia nbiatoolkit nbia-api tciatoolkit
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Feb 20, 2025 - Python
Fast dictionary-based approach for semantic annotation / entity linking
nlp search-in-text fuzzy-matching brat entity-linking semantic-annotation medical-informatics spacy-extension keywords-extraction
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Apr 30, 2024 - Python
Demonstration of using DataRobot AutoML to build survival functions using censored data about expected time to unrecoverable events.
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Aug 14, 2020 - Python
Fuzzy Matching of PACS Data with HIS/RIS Data
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May 26, 2019 - Python
Medical Term Dictionary built from MedDRA
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Apr 23, 2022 - Python
VOXRAD is a voice transcription application for radiologists leveraging locally deployed ASR and LLM models.
desktop-app python nlp windows macos productivity natural-language-processing ffmpeg reporting voice-recognition gemini openai gpt transcription radiology whisper medical-informatics multimodal openai-api llm
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Feb 11, 2025 - Python
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