Update transitive dependencies to address most Dependabot security alerts (stanford-crfm#1840)

Author: yifanmai

requirements.txt

@@ -1,7 +1,7 @@
 2captcha-python==1.1.3
 absl-py==1.2.0
 aiodns==3.0.0
-aiohttp==3.8.3
+aiohttp==3.8.5
 aiohttp-retry==2.8.3
 aiosignal==1.2.0
 aleph-alpha-client==2.14.0
@@ -21,7 +21,7 @@ bottle==0.12.23
 cachetools==5.2.0
 catalogue==2.0.8
 cattrs==22.2.0
-certifi==2022.12.7
+certifi==2023.7.22
 cffi==1.15.1
 cfgv==3.3.1
 charset-normalizer==2.1.1
@@ -55,7 +55,7 @@ greenlet==1.1.3
 gunicorn==20.1.0
 h11==0.14.0
 httplib2==0.20.4
-huggingface-hub==0.11.0
+huggingface-hub==0.15.1
 icetk==0.0.4
 identify==2.5.6
 idna==3.4
@@ -75,7 +75,7 @@ MarkupSafe==2.1.1
 matplotlib==3.6.0
 mccabe==0.7.0
 moverscore==1.0.3
-mpmath==1.2.1
+mpmath==1.3.0
 multidict==6.0.2
 multiprocess==0.70.13
 murmurhash==1.0.8
@@ -94,7 +94,7 @@ pandas==1.5.0
 pandas-stubs==1.5.0.221003
 parameterized==0.8.1
 pathspec==0.10.1
-pathy==0.6.2
+pathy==0.10.2
 Pillow==9.3.0
 platformdirs==2.5.2
 pluggy==1.0.0
@@ -124,7 +124,7 @@ pytrec-eval==0.5
 pytz==2022.4
 PyYAML==6.0
 regex==2022.9.13
-requests==2.28.1
+requests==2.31.0
 responses==0.18.0
 retrying==1.3.4
 rouge-score==0.1.2
@@ -134,18 +134,17 @@ sacrebleu==2.2.1
 sacremoses==0.0.53
 scaleapi==2.13.0
 scikit-learn==1.1.2
-scipy==1.9.1
+scipy==1.10.0
 selenium==4.8.0
 sentencepiece==0.1.97
 simple-slurm==0.2.6
 six==1.16.0
-sklearn==0.0
 smart-open==5.2.1
 sniffio==1.3.0
 sortedcontainers==2.4.0
 soupsieve==2.3.2.post1
-spacy==3.2.4
-spacy-legacy==3.0.10
+spacy==3.5.4
+spacy-legacy==3.0.12
 spacy-loggers==1.0.3
 sqlitedict==1.7.0
 srsly==2.4.4
@@ -154,7 +153,7 @@ summ-eval==0.892
 surge-api==1.1.0
 sympy==1.11.1
 tabulate==0.9.0
-thinc==8.0.17
+thinc==8.1.12
 threadpoolctl==3.1.0
 tiktoken==0.3.3
 tls-client==0.1.8
@@ -166,7 +165,7 @@ torchvision==0.13.1 ; sys_platform == "darwin"
 torch==1.12.1+cu113 ; sys_platform == "linux"
 torchvision==0.13.1+cu113 ; sys_platform == "linux"
 tqdm==4.64.1
-transformers==4.28.1
+transformers==4.33.1
 trio==0.22.0
 trio-websocket==0.9.2
 typer==0.4.2
@@ -178,7 +177,7 @@ types-tabulate==0.9.0.0
 types-urllib3==1.26.25
 typing==3.7.4.3
 typing_extensions==4.4.0
-uncertainty-calibration==0.1.3
+uncertainty-calibration==0.1.4
 undetected-chromedriver==3.2.1
 uritemplate==4.1.1
 urllib3==1.26.12

scripts/data_overlap/requirements-freeze.txt

@@ -1,6 +1,6 @@
 apache-beam==2.47.0
 bitarray==2.7.3
-certifi==2023.5.7
+certifi==2023.7.22
 charset-normalizer==3.1.0
 click==8.1.3
 cloudpickle==2.2.1

setup.cfg

@@ -48,10 +48,8 @@ install_requires=
     nltk~=3.7
     pyext~=0.7
     rouge-score~=0.1.2
-    scipy~=1.9.1
-    uncertainty-calibration~=0.1.3
-    # Work around https://github.com/p-lambda/verified_calibration/issues/11
-    # TODO: Remove after this issue is resolved
+    scipy~=1.10.0
+    uncertainty-calibration~=0.1.4
     scikit-learn~=1.1.2
 
     # Models and Metrics Extras