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Fix tests for lshmm 0.0.8

szhanpushed 1 commit to main • d3c59ba…c818a6c • 
on Jun 24, 2024

Fix tests for lshmm 0.0.8

Force push
szhanforce pushed to fix_tests_lshmm • 6d6b201…898c480 • 
on Jun 24, 2024

Reformat

szhanpushed 1 commit to fix_tests_lshmm • 1c9a077…6d6b201 • 
on Jun 24, 2024

Skip tests

szhanpushed 1 commit to fix_tests_lshmm • 1009d83…1c9a077 • 
on Jun 24, 2024

Reformat

szhanpushed 1 commit to fix_tests_lshmm • 54556c5…1009d83 • 
on Jun 24, 2024

Update how MISSING is handled when updating probabilities

szhanpushed 1 commit to fix_tests_lshmm • a343802…54556c5 • 
on Jun 24, 2024

Fix tests for lshmm 0.0.8

Force push
szhanforce pushed to fix_tests_lshmm • 3ba7c7f…a343802 • 
on Jun 24, 2024

Revert

szhanpushed 1 commit to fix_tests_lshmm • f3d5e2d…3ba7c7f • 
on Jun 24, 2024

Revert

szhanpushed 1 commit to fix_tests_lshmm • 48bfea0…f3d5e2d • 
on Jun 24, 2024

Temporarily skip tests for genotype matching

szhanpushed 1 commit to fix_tests_lshmm • 582e084…48bfea0 • 
on Jun 24, 2024

Update to lshmm 0.0.8

szhanpushed 1 commit to fix_tests_lshmm • ca2daf1…582e084 • 
on Jun 24, 2024

Fix tests for lshmm 0.0.7

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szhanforce pushed to fix_tests_lshmm • 6310537…ca2daf1 • 
on Jun 21, 2024

Remove unused variable

szhanpushed 1 commit to fix_tests_lshmm • dd58abe…6310537 • 
on Jun 21, 2024

Reformat

szhanpushed 1 commit to fix_tests_lshmm • 9f5fb90…dd58abe • 
on Jun 21, 2024

Fix tests for lshmm 0.0.7

Force push
szhanforce pushed to fix_tests_lshmm • 476f07c…9f5fb90 • 
on Jun 21, 2024

Update pins

szhanpushed 1 commit to fix_tests_lshmm • 0813eaf…476f07c • 
on Jun 21, 2024

Update tests for genotype matching

szhanpushed 1 commit to fix_tests_lshmm • 7c1c600…0813eaf • 
on Jun 21, 2024

Update tests for haploid case

szhanpushed 1 commit to fix_tests_lshmm • 5583c89…7c1c600 • 
on Jun 21, 2024

Fix tests for lshmm 0.0.6

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szhanforce pushed to fix_tests_lshmm • 51e6d0d…5583c89 • 
on Jun 20, 2024

Fix typos

szhanpushed 1 commit to fix_tests_lshmm • c3cce05…51e6d0d • 
on Jun 20, 2024

Fix tests for lshmm 0.0.6

szhancreated fix_tests_lshmm • c3cce05 • 
on Jun 20, 2024

Correct spelling etc in pack and unpack array routines

szhanpushed 45 commits to main • 25116f6…d3c59ba • 
on Jun 20, 2024

Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE

Force push
szhanforce pushed to test_imputation • 1d4f241…24d7a49 • 
on Mar 11, 2024

Pass use_threshold

szhanpushed 1 commit to test_imputation • edf6367…1d4f241 • 
on Mar 11, 2024

Add comment

szhanpushed 1 commit to test_imputation • 89e2869…edf6367 • 
on Mar 11, 2024

Implement skip when no particular allele is observed

szhanpushed 1 commit to test_imputation • 9895525…89e2869 • 
on Mar 11, 2024

Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE

Force push
szhanforce pushed to test_imputation • cb323a0…9895525 • 
on Mar 11, 2024

Refactor site sums

szhanpushed 1 commit to test_imputation • 663b5db…cb323a0 • 
on Mar 11, 2024

Minor edit

szhanpushed 1 commit to test_imputation • 8d5126b…663b5db • 
on Mar 11, 2024

Take sum of probs

szhanpushed 1 commit to test_imputation • 690bb18…8d5126b • 
on Mar 10, 2024