Repositories list

• stampipes

  Public
  This is a focused collection of makefiles and scripts for analysis on Illumina sample data.

  Python

  •10•0•3•9•Updated Mar 23, 2025Mar 23, 2025

• bcl_barcode_count

  Public
  tally barcodes from Illumina sequencing machines

  Go

  •2•1•0•0•Updated Feb 28, 2021Feb 28, 2021

• picard-parser

  Public
  A parser for Picard output

  Python

  •2•0•0•0•Updated Apr 2, 2020Apr 2, 2020

• stampipes_test_data

  Public
  Holds test data for stampipes

  0•0•0•0•Updated Sep 10, 2018Sep 10, 2018

• modwt

  Public
  An efficient modwt wavelets package. This isn't the usual discrete wavelet transform found in, for example, gsl but an extended set of algorithms designed to overcome some problems with the usual discrete wavelet transform.

  C++

  •7•1•0•0•Updated Jan 12, 2018Jan 12, 2018

• bedops

  Public
  BEDOPS: high-performance genomic feature operations

  C

  •

  Other

  •61•0•0•0•Updated Dec 28, 2017Dec 28, 2017

• hotspot

  Public
  Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.

  Shell

  •

  GNU General Public License v2.0

  •15•2•0•0•Updated May 12, 2017May 12, 2017

• hotspot2_deprecated

  Public
  A faster implementation of hotspot

  Shell

  •0•0•0•0•Updated Feb 9, 2016Feb 9, 2016

• network-motifs

  Public
  network-motifs

  C++

  •

  GNU General Public License v2.0

  •1•0•0•0•Updated Aug 20, 2015Aug 20, 2015

• footprinting2012

  Public
  DNaseI Footprinting

  C++

  •

  GNU General Public License v2.0

  •3•4•0•0•Updated Jun 12, 2015Jun 12, 2015

• fastqc_parser

  Public
  A parser for turning FastQC results into an object useful for analysis with Python

  Python

  •2•0•0•0•Updated Feb 9, 2014Feb 9, 2014

• r-utilities

  Public
  A set of utilities for R

  Perl

  •1•0•0•0•Updated Nov 27, 2013Nov 27, 2013