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This seems to be the same problem as issue #2563, but I am encountering it in 24.11.0-edge build 5929. Copying data over to the same container as work / output folder resolved the problem.
Expected behavior and actual behavior
nextflow should be able to stage data from separate container
it can't
Steps to reproduce the problem
Working on this, will update issue when I have it ready.
Program output
From .command.log in work dir:
Unable to download path: https://omicsdata.blob.core.windows.net/study-data/{stuff}.fastq.gz
Unable to download path: https://omicsdata.blob.core.windows.net/study-data/{stuff}.fastq.gz
Environment
Nextflow version: 24.11.0-edge build 5929
Java version: [?]
Operating system: Linux
Bash version: (use the command $SHELL --version)
Additional context
(Add any other context about the problem here)
The text was updated successfully, but these errors were encountered:
Bug report
This seems to be the same problem as issue #2563, but I am encountering it in 24.11.0-edge build 5929. Copying data over to the same container as work / output folder resolved the problem.
Expected behavior and actual behavior
Steps to reproduce the problem
Working on this, will update issue when I have it ready.
Program output
From
.command.log
in work dir:Environment
$SHELL --version
)Additional context
(Add any other context about the problem here)
The text was updated successfully, but these errors were encountered: