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'Unable to download path' on Azure when data in separate container from work #5864

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tanaes opened this issue Mar 9, 2025 · 0 comments
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@tanaes
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tanaes commented Mar 9, 2025

Bug report

This seems to be the same problem as issue #2563, but I am encountering it in 24.11.0-edge build 5929. Copying data over to the same container as work / output folder resolved the problem.

Expected behavior and actual behavior

  • nextflow should be able to stage data from separate container
  • it can't

Steps to reproduce the problem

Working on this, will update issue when I have it ready.

Program output

From .command.log in work dir:

Unable to download path: https://omicsdata.blob.core.windows.net/study-data/{stuff}.fastq.gz
Unable to download path: https://omicsdata.blob.core.windows.net/study-data/{stuff}.fastq.gz

Environment

  • Nextflow version: 24.11.0-edge build 5929
  • Java version: [?]
  • Operating system: Linux
  • Bash version: (use the command $SHELL --version)

Additional context

(Add any other context about the problem here)

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