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Added v2.2 release jar.

scaramonchepushed 1 commit to master • 383d3a4…4eed127 • 
on Dec 30, 2024

Revised some todos.

scaramonchepushed 62 commits to master • 5b71e52…383d3a4 • 
on Dec 30, 2024

Revised some todos.

scaramonchepushed 1 commit to feature/stringdb-protein • f8e84f6…383d3a4 • 
on Dec 30, 2024

Minor improvements and bug fixes on the expand network dialog and

scaramonchepushed 1 commit to feature/stringdb-protein • fd911dc…f8e84f6 • 
on Dec 28, 2024

When expanding on a multi-species network, user can now choose which

scaramonchepushed 1 commit to feature/stringdb-protein • e8e6e3d…fd911dc • 
on Dec 24, 2024

Changed hard-coded api12 link to api to be more general and removed a

scaramonchepushed 1 commit to feature/stringdb-protein • 632d776…e8e6e3d • 
on Dec 13, 2024

Fixed (hopefully) issue with filter initialization.

scaramonchepushed 1 commit to feature/stringdb-protein • 635a9d7…632d776 • 
on Dec 11, 2024

Various small fixes, i.e.expand by selected proteins/compounds and

scaramonchepushed 1 commit to feature/stringdb-protein • 5b64e79…635a9d7 • 
on Dec 9, 2024

Updted TODOs, removed sys outputs, and made some minor fixes (added 0.0

scaramonchepushed 1 commit to feature/stringdb-protein • 7a5b598…5b64e79 • 
on Dec 5, 2024

Updated TODOs and fixed a message to the user for loading whole species.

scaramonchepushed 1 commit to feature/stringdb-protein • 4eca919…7a5b598 • 
on Dec 5, 2024

Merge remote-tracking branch 'origin/master' into feature/stringdb-pr…

scaramonchepushed 2 commits to feature/stringdb-protein • 7392ed9…4eca919 • 
on Dec 5, 2024

Rounded up interactor score values returned from Jensenlab.

scaramonchepushed 1 commit to feature/stringdb-protein • 1e93b75…7392ed9 • 
on Dec 4, 2024

Omit saving node uniprot identifier coming from Jensenlab. Added code to

scaramonchepushed 1 commit to feature/stringdb-protein • a99334c…1e93b75 • 
on Dec 4, 2024

Updated user message for pubmed/disease query to say "XX associated

scaramonchepushed 1 commit to feature/stringdb-protein • ca5ff45…a99334c • 
on Dec 4, 2024

Fixed a typo.

scaramonchepushed 1 commit to feature/stringdb-protein • 5e55169…ca5ff45 • 
on Dec 4, 2024

Added new exception to cross-species queries for cloudflare timeouts and

scaramonchepushed 1 commit to feature/stringdb-protein • 4b4e184…5e55169 • 
on Dec 4, 2024

Added a call to STRING to retrieve missing edges between newly added

scaramonchepushed 1 commit to feature/stringdb-protein • f1d0f10…4b4e184 • 
on Dec 4, 2024

Added a check for the note type source being null in compound-only

scaramonchepushed 1 commit to feature/stringdb-protein • ee0fcf4…f1d0f10 • 
on Dec 2, 2024

Added whole species query going to STRING API, except in the case of

scaramonchepushed 1 commit to feature/stringdb-protein • c9262de…ee0fcf4 • 
on Nov 27, 2024

Added latest stringApp version

scaramonchepushed 1 commit to feature/stringdb-protein • 0de95d8…c9262de • 
on Nov 27, 2024

Made sure to properly combining the "existing" api parameter with the

scaramonchepushed 1 commit to feature/stringdb-protein • 3615c8c…0de95d8 • 
on Nov 26, 2024

Don't enable source type unless we have mixed types.

scootermorrispushed 1 commit to feature/stringdb-protein • 9df3807…3615c8c • 
on Nov 20, 2024

Minor changes to the extra queries needed to be done when expanding.

scaramonchepushed 1 commit to feature/stringdb-protein • a10add8…9df3807 • 
on Nov 15, 2024

Made sure we don't exit the method when one of the extra info queries

scaramonchepushed 1 commit to feature/stringdb-protein • 27d2541…a10add8 • 
on Nov 15, 2024

Expand network was revised for various test cases and has a new tunable

scaramonchepushed 1 commit to feature/stringdb-protein • e778515…27d2541 • 
on Nov 14, 2024

Allow whole species retrieval for viral species.

scaramonchepushed 1 commit to feature/stringdb-protein • 1f1c3b0…e778515 • 
on Nov 14, 2024

Don't try to fetch interactions from STRING if the species is viral.

scaramonchepushed 1 commit to feature/stringdb-protein • 7b4f499…1f1c3b0 • 
on Nov 14, 2024

Added call to STRING-DB for node information whenever we get the nodes

scaramonchepushed 1 commit to feature/stringdb-protein • 1347984…7b4f499 • 
on Nov 12, 2024

Fixing some small issues with changing confidence in compound only

scaramonchepushed 1 commit to feature/stringdb-protein • 46941dc…1347984 • 
on Nov 11, 2024

Added functionality to fetch intra-species interactions for all species

scaramonchepushed 1 commit to feature/stringdb-protein • ccdf34c…46941dc • 
on Nov 11, 2024