Activity
Revised some todos.
Revised some todos.
Minor improvements and bug fixes on the expand network dialog and
Minor improvements and bug fixes on the expand network dialog and
When expanding on a multi-species network, user can now choose which
When expanding on a multi-species network, user can now choose which
Changed hard-coded api12 link to api to be more general and removed a
Changed hard-coded api12 link to api to be more general and removed a
Fixed (hopefully) issue with filter initialization.
Fixed (hopefully) issue with filter initialization.
Various small fixes, i.e.expand by selected proteins/compounds and
Various small fixes, i.e.expand by selected proteins/compounds and
Updted TODOs, removed sys outputs, and made some minor fixes (added 0.0
Updted TODOs, removed sys outputs, and made some minor fixes (added 0.0
Updated TODOs and fixed a message to the user for loading whole species.
Updated TODOs and fixed a message to the user for loading whole species.
Merge remote-tracking branch 'origin/master' into feature/stringdb-pr…
Merge remote-tracking branch 'origin/master' into feature/stringdb-pr…
Rounded up interactor score values returned from Jensenlab.
Rounded up interactor score values returned from Jensenlab.
Omit saving node uniprot identifier coming from Jensenlab. Added code to
Omit saving node uniprot identifier coming from Jensenlab. Added code to
Updated user message for pubmed/disease query to say "XX associated
Updated user message for pubmed/disease query to say "XX associated
Fixed a typo.
Fixed a typo.
Added new exception to cross-species queries for cloudflare timeouts and
Added new exception to cross-species queries for cloudflare timeouts and
Added a call to STRING to retrieve missing edges between newly added
Added a call to STRING to retrieve missing edges between newly added
Added a check for the note type source being null in compound-only
Added a check for the note type source being null in compound-only
Added whole species query going to STRING API, except in the case of
Added whole species query going to STRING API, except in the case of
Added latest stringApp version
Added latest stringApp version
Made sure to properly combining the "existing" api parameter with the
Made sure to properly combining the "existing" api parameter with the
Don't enable source type unless we have mixed types.
Don't enable source type unless we have mixed types.
Minor changes to the extra queries needed to be done when expanding.
Minor changes to the extra queries needed to be done when expanding.
Made sure we don't exit the method when one of the extra info queries
Made sure we don't exit the method when one of the extra info queries
Expand network was revised for various test cases and has a new tunable
Expand network was revised for various test cases and has a new tunable
Allow whole species retrieval for viral species.
Allow whole species retrieval for viral species.
Don't try to fetch interactions from STRING if the species is viral.
Don't try to fetch interactions from STRING if the species is viral.
Added call to STRING-DB for node information whenever we get the nodes
Added call to STRING-DB for node information whenever we get the nodes
Fixing some small issues with changing confidence in compound only
Fixing some small issues with changing confidence in compound only
Added functionality to fetch intra-species interactions for all species
Added functionality to fetch intra-species interactions for all species