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23 Open 78 Closed
23 Open 78 Closed
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Issues list

[CODE IMPROVEMENT] directly access results from spatialdata object without need to memory-mapping
#218 opened Feb 25, 2025 by sophiamaedler
[CODE IMPROVEMENT] add support for single-cell extraction both with HDF5 and Zarr backend
#217 opened Feb 25, 2025 by sophiamaedler
Support Python 3.12+
#214 opened Feb 24, 2025 by Zethson first pypi release
2
[BUG] inconsistent dtype of cell_ids in different spatialdata layers
#208 opened Feb 21, 2025 by sophiamaedler first pypi release
update alpha base version to support numpy 2.X
#196 opened Feb 16, 2025 by sophiamaedler
1
[FEATURE] support numpy 2.x
#194 opened Feb 16, 2025 by sophiamaedler
1
relocate existing write functions from filehandler to new module
#181 opened Feb 11, 2025 by sophiamaedler
add module for working with spatialdata
#180 opened Feb 11, 2025 by sophiamaedler
Coding Best Practices package design
#176 opened Feb 11, 2025 by sophiamaedler
7 of 28 tasks
spatialdata support in scPortrait package design
#175 opened Feb 11, 2025 by sophiamaedler
6 of 20 tasks
add support for batched images enhancement New feature or request
#174 opened Feb 11, 2025 by sophiamaedler
standardised container(s) for region annotations enhancement New feature or request
#173 opened Feb 11, 2025 by sophiamaedler
standardize approach for defining calibration crosses enhancement New feature or request
#172 opened Feb 11, 2025 by sophiamaedler
1
track segmentation metadata enhancement New feature or request
#153 opened Feb 9, 2025 by sophiamaedler
1
Track Project related metadata in sdata.attrs
#148 opened Feb 6, 2025 by sophiamaedler
2 of 3 tasks
1
Segmentation fault during extraction bug Something isn't working
#136 opened Jan 9, 2025 by nik-as
2
Make it easier for users to contribute to scPortrait
#121 opened Nov 30, 2024 by sophiamaedler
3 tasks
first pypi release
1
@namsaraeva
1
Stitching fails on Windows due to temp_mmap array size error
#111 opened Nov 15, 2024 by MarcMarc94
Binary mask tiles are not correctly stitched
#100 opened Nov 10, 2024 by MarcMarc94
2
Tissue Region masking in scPortrait
#50 opened Aug 17, 2024 by sophiamaedler
1
@sophiamaedler @LLehner
5
discrepancies in number of segmented nuclei in WGA segmentation method between different environments
#36 opened Jul 3, 2024 by sophiamaedler
@sophiamaedler @namsaraeva
3
run pipeline on windows computer
#28 opened Jun 24, 2024 by sophiamaedler
@sophiamaedler
4
[testing] implement full pipeline test with an example datasets
#9 opened Jun 4, 2024 by sophiamaedler
9 tasks
2
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