We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
This code (I run it inside docker):
from future import division import math import sys import numpy as np import gqcpy from pyscf import gto, scf, ao2mo
print()
np.set_printoptions(precision=4, linewidth=600) molecule = gqcpy.Molecule.ReadXYZ("h2.xyz")
basis_set = "cc-pvtz"
N = molecule.numberOfElectrons()
B = gqcpy.HomogeneousMagneticField([0,0,0])
spin_orbital_basis = gqcpy.LondonRSpinOrbitalBasis(molecule, basis_set, B)
S = spin_orbital_basis.quantize(gqcpy.OverlapOperator()) print("S",S.parameters().real)
print("step 1")
hamiltonian = spin_orbital_basis.quantize(gqcpy.FQMolecularMagneticHamiltonian(molecule, B)) print("Hamiltonian quantized successfully:", hamiltonian)
print("step 2")
objective = gqcpy.DiagonalRHFFockMatrixObjective_cd(hamiltonian, 1.0e-03) print("Objective created successfully:", objective)
print("step 3")
environment = gqcpy.RHFSCFEnvironment_cd.WithCoreGuess(N, hamiltonian, S) print("Environment set up successfully:", environment)
print("step 4")
solver = gqcpy.RHFSCFSolver_cd.Plain(threshold=1.0e-02, maximum_number_of_iterations=1000) print("Solver created successfully:", solver)
print("step 5")
try: qc_structure = gqcpy.RHF_cd.optimize(objective, solver, environment) print("Optimization completed successfully:", qc_structure) except Exception as e: print("Optimization failed with exception:", e)
print("step 6"),
electronic_energy = qc_structure.groundStateEnergy() nuclear_repulsion = gqcpy.NuclearRepulsionOperator(molecule.nuclearFramework()).value()
RHF_energy = (electronic_energy + n
leads to the error after STEP 5:
python: /usr/local/miniconda3/include/eigen3/Eigen/src/LU/PartialPivLU_LAPACKE.h:76: static int Eigen::internal::partial_lu_impl<std::complex, StorageOrder, int>::blocked_lu(Eigen::Index, Eigen::Index, Eigen::dcomplex*, Eigen::Index, int*, int&, int) [with int StorageOrder = 0; Eigen::Index = long int; Eigen::dcomplex = std::complex]: Assertion `info >= 0' failed. Aborted (core dumped)
but works with cc-pvdz
The text was updated successfully, but these errors were encountered:
No branches or pull requests
This code (I run it inside docker):
from future import division
import math
import sys
import numpy as np
import gqcpy
from pyscf import gto, scf, ao2mo
print()
np.set_printoptions(precision=4, linewidth=600)
molecule = gqcpy.Molecule.ReadXYZ("h2.xyz")
basis_set = "cc-pvtz"
N = molecule.numberOfElectrons()
B = gqcpy.HomogeneousMagneticField([0,0,0])
spin_orbital_basis = gqcpy.LondonRSpinOrbitalBasis(molecule, basis_set, B)
S = spin_orbital_basis.quantize(gqcpy.OverlapOperator())
print("S",S.parameters().real)
print("step 1")
hamiltonian = spin_orbital_basis.quantize(gqcpy.FQMolecularMagneticHamiltonian(molecule, B))
print("Hamiltonian quantized successfully:", hamiltonian)
print("step 2")
objective = gqcpy.DiagonalRHFFockMatrixObjective_cd(hamiltonian, 1.0e-03)
print("Objective created successfully:", objective)
print("step 3")
environment = gqcpy.RHFSCFEnvironment_cd.WithCoreGuess(N, hamiltonian, S)
print("Environment set up successfully:", environment)
print("step 4")
solver = gqcpy.RHFSCFSolver_cd.Plain(threshold=1.0e-02, maximum_number_of_iterations=1000)
print("Solver created successfully:", solver)
print("step 5")
try:
qc_structure = gqcpy.RHF_cd.optimize(objective, solver, environment)
print("Optimization completed successfully:", qc_structure)
except Exception as e:
print("Optimization failed with exception:", e)
print("step 6"),
electronic_energy = qc_structure.groundStateEnergy()
nuclear_repulsion = gqcpy.NuclearRepulsionOperator(molecule.nuclearFramework()).value()
RHF_energy = (electronic_energy + n
leads to the error after STEP 5:
python: /usr/local/miniconda3/include/eigen3/Eigen/src/LU/PartialPivLU_LAPACKE.h:76: static int Eigen::internal::partial_lu_impl<std::complex, StorageOrder, int>::blocked_lu(Eigen::Index, Eigen::Index, Eigen::dcomplex*, Eigen::Index, int*, int&, int) [with int StorageOrder = 0; Eigen::Index = long int; Eigen::dcomplex = std::complex]: Assertion `info >= 0' failed.
Aborted (core dumped)
but works with cc-pvdz
The text was updated successfully, but these errors were encountered: