Commit VERSION file

Update API endpoints and make sure that workers respect NCBI rate limits

Add --version flag to k2

Use absolute paths when processing downloaded files

Fix an issue causing k2 to generate empty library files for plasmid, …

Fix an issue causing plasmid download to falsely error out

Fix memory leaks and crashes in previous release

Fix an issue causing kraken2 to incorrectly format (un)classified ouput

Update documentation for release of v2.1.4

Fix typo

Minor cleanup to source code

Report a warning instead of crashing when accession2taxid files conta…

Parse storage units

Update SILVA version to 138.2

Speed up processing of sequences across all kraken2 operations

Fetch accessions directly instead of using the NCBI API

Speed up decompression using zlib, make downloading large amounts of …

Remove taxids from seqid2taxid.map file that are not present in the n…

Fix an issue causing k2 to not find a database when a relative path i…

Fix issue causing k2 to crash while comparing mtimes

Minor change to how prelim.map and seqid2taxid are generated

Add progress bar when building database

Make library directory structure consistent across all builds

Fix an issue causing k2 to redundantly process the library.fna and th…

Fix an issue causing http.client to return BadStatusLine when trying …

Fix an issue causing k2 to error out while processing accessions down…

Fix an issue causing k2mask to segfault

Fix an issue causing urls to be formatted incorrectly

Correctly loop over hash table items

Fix an issue causing k2 to error out while extracting files from GTDB…